Table 1.
Locus | 5' miR390 site | 3' miR390 site | 5' miR529 site | 5' miR156 site | 3' miR156 site | ta-siAP2 | ta-siARF | ta-siZNF |
PpTAS3a/PpTAS6a | S | S | S | S | S | + | + | + |
PpTAS3b | P | P | N/A | N/A | N/A | + | + | N/A |
PpTAS3c | S | S | N/A | N/A | N/A | – | + | N/A |
PpTAS3d/PpTAS6c | S | S | P | S | S | + | + | Absent |
PpTAS3e | S | S | N/A | N/A | N/A | – | + | N/A |
PpTAS3f/PpTAS6b | S | S | P | P | S | + | + | Absent |
S, degradome-based evidence of slicing; P, predicted miRNA target site w/o degradome evidence; +, ta-siRNA pairs well with one or more target; –, ta-siRNA does not pair well (score ≥ 6) with any targets; N/A, not applicable; absent, site or ta-siRNA not found within locus.