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Medians of backbone angles of canonical β(t)/γ(+) state and β(+)/γ(t) substate in SPC/E, KCl simulation of d(GGGG)4. The nucleotide numbering is in the 5′-3′ direction, n is the affected nucleotide. The trend in other simulations is similar.
| δ(n−1) | P(n−1) | χ(n−1) | ε(n−1) | ζ(n−1) | α(n) | β(n) | γ(n) | δ(n) | P(n) | χ(n) | ε(n) | ζ(n) | α(n+1) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Canonical substate | 129 | 141 | 237 | 191 | 273 | 288 | 177 | 55 | 129 | 143 | 239 | 189 | 264 | 288 |
| Flipped substate | 130 | 138 | 273 | 195 | 276 | 265 | 65 | 176 | 119 | 133 | 193 | 203 | 285 | 280 |
