Fig. 2.

Scheme of breakpoints in the 10.RU.6637 genome. a Comparison of the breakpoints in 10.RU.6637 (bottom) and 02.UZ.AY829214 (top) genome sequences determined by jpHMM. The regions between the breakpoints are numbered from I to X. Region V is divided into two subregions, V-I and V-II. Arrows point to the differences in breakpoint positions of the compared HIV-1 genomes (regions II/III and IV/V-I). b SimPlot diagram. The sample of HIV-1 genome sequences used for analysis contained the sequences of different subtypes, including the circulating HIV-1 recombinant forms 02_AG and 01_AE