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. 2012 Nov 26;7(11):e48015. doi: 10.1371/journal.pone.0048015

Table 2. DALI-identified structural homologs of bcPadR1 and bcPadR2.* .

bcPadR1/bcPadR2
PDB-ID Z-score RMSD (Å) Cα aligned Nr. res % id. Protein name Protein family Ref.
3HHH 16.1/17.7 1.6/1.7 101/101 103/103 42/61 n.k. PadR-s2 u.
3L7W 14.2/13.6 2.0/2.7 99/100 106/106 27/27 n.k. PadR-s2 u.
3RI2 14.0/14.0 2.5/1.6 99/100 112/112 30/26 n.k. PadR-s2 u.
1XMA 13.9/14.8 2.6/1.5 97/98 103/101 22/20 n.k. PadR-s2 u.
1LNW 12.8/12.0 2.7/3.0 93/88 141/141 13/16 MexR MarR [40]
3F8B 12.5/11.7 3.1/2.7 100/98 105/101 23/30 LmrR PadR-s2 [9]
1YG2 11.0/10.6 3.2/2.8 83/82 169/169 22/24 AphA PadR-s1 [8]
1F4K 10.6/11.0 3.1/2.5 98/98 115/115 12/15 RTP RTP [34]
1SMT 10.1/9.5 2.6/2.9 78/77 98/101 14/19 SmtB SmtB/ArsR [41]
1SD6 9.7/9.6 3.3/3.1 84/84 119/119 15/19 BlaI MecI/BlaI [35]
2E1N 9.3/9.1 3.5/3.1 90/89 112/112 21/25 Pex PadR-s1 [7]

Abbreviations: PadR-s1, PadR-like subfamily-1; PadR-s2, PadR-like subfamily-2, n.k., not known; u, unpublished.

*

The DALI-search was performed using a single subunit of each bcPadR dimer.