Table 2. DALI-identified structural homologs of bcPadR1 and bcPadR2.* .
bcPadR1/bcPadR2 | ||||||||
PDB-ID | Z-score | RMSD (Å) | Cα aligned | Nr. res | % id. | Protein name | Protein family | Ref. |
3HHH | 16.1/17.7 | 1.6/1.7 | 101/101 | 103/103 | 42/61 | n.k. | PadR-s2 | u. |
3L7W | 14.2/13.6 | 2.0/2.7 | 99/100 | 106/106 | 27/27 | n.k. | PadR-s2 | u. |
3RI2 | 14.0/14.0 | 2.5/1.6 | 99/100 | 112/112 | 30/26 | n.k. | PadR-s2 | u. |
1XMA | 13.9/14.8 | 2.6/1.5 | 97/98 | 103/101 | 22/20 | n.k. | PadR-s2 | u. |
1LNW | 12.8/12.0 | 2.7/3.0 | 93/88 | 141/141 | 13/16 | MexR | MarR | [40] |
3F8B | 12.5/11.7 | 3.1/2.7 | 100/98 | 105/101 | 23/30 | LmrR | PadR-s2 | [9] |
1YG2 | 11.0/10.6 | 3.2/2.8 | 83/82 | 169/169 | 22/24 | AphA | PadR-s1 | [8] |
1F4K | 10.6/11.0 | 3.1/2.5 | 98/98 | 115/115 | 12/15 | RTP | RTP | [34] |
1SMT | 10.1/9.5 | 2.6/2.9 | 78/77 | 98/101 | 14/19 | SmtB | SmtB/ArsR | [41] |
1SD6 | 9.7/9.6 | 3.3/3.1 | 84/84 | 119/119 | 15/19 | BlaI | MecI/BlaI | [35] |
2E1N | 9.3/9.1 | 3.5/3.1 | 90/89 | 112/112 | 21/25 | Pex | PadR-s1 | [7] |
Abbreviations: PadR-s1, PadR-like subfamily-1; PadR-s2, PadR-like subfamily-2, n.k., not known; u, unpublished.
The DALI-search was performed using a single subunit of each bcPadR dimer.