Table 3. Core genome genes of C. perfringens plasmids.
| pNetB-NE10 | pCpb2-CP1 | Gene/orf | Name/Function |
| pNetB-NE10_1 | pCpb2-CP1_1 | hypothetical protein, unknown | |
| pNetB-NE10_6 | pCpb2-CP1_6 | rep | plasmid replication protein |
| pNetB-NE10_8 | pCpb2-CP1_8 | regD | DNA-binding transcriptional repressor |
| pNetB-NE10_9 | pCpb2-CP1_9 | hypothetical protein, unknown | |
| pNetB-NE10_10 | pCpb2-CP1_10 | hypothetical protein, unknown | |
| pNetB-NE10_11 | pCpb2-CP1_11 | pemK | PemK, growth inhibitor (COG2337) |
| pNetB-NE10_14 | pCpb2-CP1_14 | hypothetical protein, unknown | |
| pNetB-NE10_15 | pCpb2-CP1_15 | srt | sortase family protein |
| pNetB-NE10_16 | pCpb2-CP1_16 | hypothetical protein, unknown | |
| pNetB-NE10_17 | pCpb2-CP1_17 | hypothetical protein, unknown | |
| pNetB-NE10_18 | pCpb2-CP1_18 | dam | DNA adenine-specific methyltransferase |
| pNetB-NE10_19 | pCpb2-CP1_19 | hypothetical protein, unknown | |
| pNetB-NE10_21 | pCpb2-CP1_21 | intP | tyrosine integrase |
| pNetB-NE10_22 | pCpb2-CP1_23 | tcpA | conjugation protein TcpA, FtsK/SpoIIIE DNA translocase |
| pNetB-NE10_23 | pCpb2-CP1_25 | tcpC | conjugation protein TcpC |
| pNetB-NE10_24 | pCpb2-CP1_26 | tcpD | conjugation protein TcpD |
| pNetB-NE10_25 | pCpb2-CP1_27 | tcpE | conjugation protein TcpE |
| pNetB-NE10_26 | pCpb2-CP1_28 | tcpF | conjugation protein TcpF |
| pNetB-NE10_27 | pCpb2-CP1_31 | tcpG | conjugation protein TcpG |
| pNetB-NE10_29 | pCpb2-CP1_33 | tcpH | conjugation protein TcpH |
| pNetB-NE10_30 | pCpb2-CP1_34 | tcpI | conjugation protein TcpI |
| pNetB-NE10_31 | pCpb2-CP1_35 | tcpJ | conjugation protein TcpJ |
| pNetB-NE10_40 | pCpb2-CP1_53 | hypothetical protein, unknown | |
| pNetB-NE10_42 | pCpb2-CP1_54 | hypothetical protein, unknown |
Core genome composed of 24 genes of the nine C. perfringens plasmids pCPF4969, pCPF5603, pJIR3844, pCP8533etx, pCPPB-1, pCpb2-CP1, pNetB-NE10, pCW3 and pJIR3535. The core genome was computed with the software tool Edgar.