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. Author manuscript; available in PMC: 2013 Nov 13.
Published in final edited form as: J Chem Theory Comput. 2012 Oct 11;8(11):4413–4424. doi: 10.1021/ct300696c

Table 3.

Number of folding events Nf in the standard MD simulations and comparison of folding time τf,sim (μs) with experimental τf,expt.

Peptidea N f τ f,sim τ f,expt τf,expt/τf,sim
Fs 45 0.04 ± 0.01 0.16 – 0.22b ~ 4.5 – 6.5
D47P 4 0.9 ± 0.3 ~ 13c ~ 15
Trp-cage 7 0.4 ± 0.13 4.1d ~ 11
BBA5 13 0.8 ± 0.3 8 ± 3.5e ~ 9
α3D 3 11 ± 4 3 ± 1.2f ~ 0.3
a

Standard MD simulations were performed at 300 K for Fs, D47P and Trp-cage and at 310 K for BBA5 and α3D.

b

At 301 K with T-jump CD.109,110

c

At 298 K with NMR.53

d

At 296 K with T-jump CD.69

e

At 298 K with T-jump uorescence.75

f

At 323 K and pH 2.2 with T-jump IR.105

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