Table 4.
The top 40 Pfam domains and families in D. japonica unigenes
| Pfam_ID | Conserved Domain | Genes |
|---|---|---|
| pfam00069 |
Protein kinase domain |
307 |
| pfam12796 |
Ankyrin repeats |
101 |
| pfam00076 |
RNA recognition motif |
71 |
| pfam00071 |
Ras family |
62 |
| pfam07690 |
Major Facilitator Superfamily |
49 |
| pfam07714 |
Protein tyrosine kinase |
38 |
| pfam00876 |
Innexin |
34 |
| pfam00443 |
Ubiquitin carboxyl-terminal hydrolase |
33 |
| pfam00067 |
Cytochrome P450 |
32 |
| pfam00270 |
DEAD/DEAH box helicase |
29 |
| pfam00102 |
Protein-tyrosine phosphatase |
28 |
| pfam00001 |
7 transmembrane receptor (rhodopsin family) |
27 |
| pfam00022 |
Actin |
27 |
| pfam00112 |
Papain family cysteine protease |
27 |
| pfam00350 |
Dynamin family |
26 |
| pfam00240 |
Ubiquitin family |
23 |
| pfam00335 |
Tetraspanin family |
23 |
| pfam11901 |
Protein of unknown function (DUF3421) |
23 |
| pfam03028 |
Dynein heavy chain and region D6 of dynein motor |
22 |
| pfam00226 |
DnaJ domain |
21 |
| pfam00271 |
Helicase conserved C-terminal domain |
21 |
| pfam00012 |
Hsp70 protein |
20 |
| pfam02931 |
Neurotransmitter-gated ion-channel ligand binding domain |
20 |
| pfam00153 |
Mitochondrial carrier protein |
19 |
| pfam00179 |
Ubiquitin-conjugating enzyme |
19 |
| pfam00620 |
RhoGAP domain |
19 |
| pfam01576 |
Myosin tail |
19 |
| pfam03953 |
Tubulin C-terminal domain |
19 |
| pfam00004 |
ATPase family associated with various cellular activities |
16 |
| pfam00017 |
SH2 domain |
16 |
| pfam00060 |
Ligand-gated ion channel |
16 |
| pfam00089 |
Trypsin |
16 |
| pfam00155 |
Aminotransferase class I and II |
16 |
| pfam00168 |
C2 domain |
16 |
| pfam01145 |
SPFH domain/Band 7 family |
16 |
| pfam00046 |
Homeobox domain |
15 |
| pfam00091 |
Tubulin/FtsZ family, GTPase domain |
15 |
| pfam00307 |
Calponin homology (CH) domain |
15 |
| pfam00501 |
AMP-binding enzyme |
15 |
| pfam00782 | Dual specificity phosphatase, catalytic domain | 15 |