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. 2012 Jun 29;13:289. doi: 10.1186/1471-2164-13-289

Table 5.

Comparative analysis of D. japonica CNS development genes with S. mediterranea and the schistosoma

GO Term
 D. japonicaUnigenes
 UniProt KB Homology
 UniProt E-value
 S. mediterranea
 Schistosoma
        Genome mRNA Genome mRNA
ventral cord development
 Dj_CL2868_001_b2
 Protein numb
 2.00E-68
 +
 +
 +
 +
Dj_CL0775_001_b2
 Ras-related protein Rac1
 2.00E-85
 +
 +
 +
 +
Dj_aH_314_P04.full
 Protein nubbin
 7.00E-21
 +
 +
 +
  
Dj_aH_000_00626HN.full
 Zinc finger protein jing
 1.00E-12
 +
 +
 +
  
brain development
 Dj_CL0266_002_b2
 Dynein heavy chain, cytoplasmic
 0.00E + 00
 +
 +
 +
 +
Dj_aH_323_P16
 DNA topoisomerase 2-beta
 1.00E-129
 +
 +
 +
 +
Dj_CL2992_001_b2
 Probable global transcription activator SNF2L1
 1.00E-104
 +
 +
 +
 +
Dj_CL0800_001_b2
 Transcriptional regulator ATRX
 5.00E-84
 +
 +
 +
 +
Dj_aH_133136_J24
 Myosin-10
 2.00E-80
 +
 +
 +
 +
Dj_CL1927_001_b2
 Protein Wnt-4
 3.00E-62
 +
 +
 +
 +
Dj_CL1142_001_b2
 Brain tumor protein
 5.00E-35
 +
 +
 +
 +
Dj_CL2438_001_b2
 Ubiquitin carboxyl-terminal hydrolase isozyme L5
 3.00E-72
 +
 +
 +
 +
Dj_CL1575_001_b2
 Alpha-soluble NSF attachment protein
 1.00E-77
 +
 +
 +
 +
Dj_aH_121124_O06
 cGMP-dependent protein kinase 1
 4.00E-81
 +
 +
 +
 +
Dj_aH_203_F09
 Neurofibromin
 2.00E-40
 +
 +
 +
 +
Dj_aH_517_H15.double
 Receptor tyrosine-protein kinase erbB-4
 3.00E-83
 +
 +
 +
 +
Dj_aH_526_D23.double
 Hypoxanthine-guanine phosphoribosyltransferase
 4.00E-61
 +
 +
 +
 +
Dj_aH_214_D06.full
 Homeobox protein SIX3
 2.00E-90
 +
 +
 +
 +
Dj_aH_202_C21
 Plasma membrane calcium-transporting ATPase 3
 8.00E-47
 +
 +
 +
 +
Dj_CL0788_001_b2
 Neural cell adhesion molecule 1
 5.00E-18
 +
 +
 +
 +
Dj_aH_204_E12
 Protein kinase C iota type
 1.00E-49
 +
 +
 +
 +
Dj_CL3335_001_b2
 Nuclear factor 1 B-type
 4.00E-14
 +
 +
 +
 +
Dj_aH_307_L04.rev
 cGMP-dependent protein kinase 1
 8.00E-55
 +
 +
 +
 +
Dj_CL3457_001_b2
 RNA binding protein fox-1 homolog 1
 5.00E-33
 +
 +
 +
 +
Dj_CL1765_001_b2
 Zinc finger protein ZIC 2
 2.00E-73
 +
 +
 +
 +
Dj_aH_503_H01
 Epidermal growth factor receptor
 9.00E-38
 +
 +
 +
 +
Dj_aH_511_L17
 Tubby-related protein 3
 2.00E-44
 +
 +
 +
 +
Dj_CL1678_001_b2
 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
 2.00E-35
 +
 +
 +
 +
Dj_CL2162_001_b2
 Menin
 1.00E-37
 +
 +
 +
 +
Dj_CL3785_001_b2
 Excitatory amino acid transporter 2
 5.00E-28
 +
 +
 +
 +
Dj_aH_514_N16
 DNA topoisomerase 2-beta
 2.00E-33
 +
 +
 +
 +
Dj_aH_325_L12.double
 Paired mesoderm homeobox protein 2B
 2.00E-28
 +
 +
 +
 +
Dj_aH_305_P01
 Transcriptional regulator ATRX
 9.00E-29
 +
 +
 +
 +
Dj_aH_520_E14
 Epidermal growth factor receptor
 9.00E-15
 +
 +
 +
 +
Dj_aH_000_01325HH.double
 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
 1.00E-24
 +
 +
 +
 +
Dj_aH_217_D18
 Cysteine string protein
 7.00E-28
 +
 +
 +
 +
Dj_aH_402_H01
 LIM homeobox transcription factor 1-alpha
 2.00E-29
 +
 +
 +
 +
Dj_CL3423_001_b2
 Lethal(2) giant larvae protein homolog 1
 2.00E-14
 +
 +
 +
 +
Dj_aH_222_K23
 Leishmanolysin-like peptidase
 2.00E-38
 +
 +
 +
 +
Dj_aH_505_J10
 Ski oncogene
 1.00E-32
 +
 +
 +
 +
Dj_aH_519_D15.double
 Bardet-Biedl syndrome 2 protein homolog
 4.00E-51
 +
 +
 +
 +
Dj_CL0001_086_b2
 Paired box protein Pax-6
 5.00E-72
 +
 +
 +
 +
Dj_CL3673_001_b2
 Glutamate [NMDA] receptor subunit epsilon-1
 2.00E-37
 +
 +
 +
 +
Dj_aH_000_04532HH.full
 Protocadherin-18
 3.00E-39
 +
  
 +
 +
Dj_aH_523_G03.rev
 Tubby-related protein 3
 4.00E-23
 +
 +
 +
 +
Dj_CL1956_001_b2
 Homeobox protein meis3-A
 3.00E-44
 +
 +
 +
 +
Dj_CL1514_001_b2
 Protocadherin-like wing polarity protein stan
 2.00E-20
 +
 +
 +
 +
Dj_CL2141_001_b2
 Large proline-rich protein BAG6
 2.00E-11
 +
 +
 +
 +
Dj_aH_306_A21
 Sphingosine kinase 2
 3.00E-14
 +
 +
 +
  
Dj_CL3244_001_b2
 Neuroligin-4, X-linked
 1.00E-21
 +
 +
 +
  
Dj_CL4115_001_b2
 Neuroglian
 2.00E-41
 +
 +
 +
  
Dj_aH_306_H01
 Protein phosphatase Slingshot
 6.00E-14
 +
 +
 +
  
Dj_CL1452_001_b2
 SH3 and multiple ankyrin repeat domains protein 2
 3.00E-18
 +
 +
 +
  
Dj_CL1757_001_b2
 Intraflagellar transport protein 88 homolog
 4.00E-74
 +
 +
 +
  
Dj_aH_527_L21
 Cytosolic carboxypeptidase 1
 3.00E-76
 +
 +
 +
  
Dj_aH_522_B06
 Slit homolog 2 protein (Fragment)
 7.00E-15
 +
 +
 +
  
Dj_aH_137140_C22
 Bardet-Biedl syndrome 4 protein
 6.00E-47
 +
 +
 +
  
Dj_aH_303_K17
 Zinc finger protein Dzip1
 1.00E-33
 +
 +
 +
  
Dj_aH_207_O05
 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
 8.00E-88
 +
 +
 +
  
Dj_CL0854_001_b2
 Secreted frizzled-related protein 5
 3.00E-29
 +
 +
 +
  
Dj_CL3133_001_b2
 Cytosolic carboxypeptidase 1
 3.00E-35
 +
 +
 +
  
Dj_aH_313_M09.double
 Cyclin-dependent kinase 5 activator 1
 2.00E-48
 +
 +
 +
  
Dj_CL0876_001_b2
 Sodium/calcium exchanger 1
 1.00E-161
 +
 +
 +
  
Dj_aH_303_F09
 Frizzled-8
 1.00E-21
 +
 +
 +
  
Dj_CL4143_001_b2
 Intraflagellar transport protein 88 homolog
 2.00E-81
 +
 +
 +
  
Dj_aH_530_O19
 Paired box protein Pax-6
 9.00E-55
 +
 +
 +
  
Dj_aH_007_F21
 Protein Hook homolog 3
 6.00E-13
 +
 +
  
  
Dj_aH_309_N15.double
 Dixin
 6.00E-11
 +
 +
  
  
Dj_CL4393_001_b2
 Endothelin-converting enzyme 2
 7.00E-34
 +
 +
  
  
Dj_aH_325_L06
 Centrosomal protein of 290 kDa
 3.00E-31
 +
 +
  
  
Dj_CL0234_001_b2
 Reticulon-4
 2.00E-13
 +
 +
  
  
Dj_aH_518_F04.double
 Ceroid-lipofuscinosis neuronal protein 5
 2.00E-74
 +
 +
  
  
spinal cord development
 Dj_aH_203_F09
 Neurofibromin
 2.00E-40
 +
 +
 +
 +
Dj_aH_000_02581HH
 Calpain-A
 1.00E-51
 +
 +
 +
 +
Dj_aH_502_D11
 Calpain-A
 2.00E-67
 +
 +
 +
 +
Dj_aH_511_L17
 Tubby-related protein 3
 2.00E-44
 +
 +
 +
 +
Dj_CL3713_001_b2
 Suppressor of fused homolog
 2.00E-21
 +
 +
 +
 +
Dj_aH_000_01210HH.full
 Suppressor of fused homolog
 3.00E-15
 +
 +
 +
 +
Dj_CL3673_001_b2
 Glutamate [NMDA] receptor subunit epsilon-1
 2.00E-37
 +
 +
 +
 +
Dj_aH_523_G03.rev
 Tubby-related protein 3
 4.00E-23
 +
 +
 +
 +
Dj_aH_522_B06
 Slit homolog 2 protein (Fragment)
 7.00E-15
 +
 +
 +
  
Dj_aH_000_03614HH
 DNA-binding protein SMUBP-2
 4.00E-23
 +
 +
  
  
central nervous system  neuron differentiation
 Dj_CL2485_001_b2
 Spastin
 1.00E-83
 +
 +
 +
 +
Dj_aH_526_D23.double
 Hypoxanthine-guanine phosphoribosyltransferase
 4.00E-61
 +
 +
 +
 +
Dj_aH_511_L17
 Tubby-related protein 3
 2.00E-44
 +
 +
 +
 +
Dj_aH_402_H01
 LIM homeobox transcription factor 1-alpha
 2.00E-29
 +
 +
 +
 +
Dj_aH_523_G03.rev
 Tubby-related protein 3
 4.00E-23
 +
 +
 +
 +
Dj_aH_527_L21
 Cytosolic carboxypeptidase 1
 3.00E-76
 +
 +
 +
  
Dj_CL3133_001_b2
 Cytosolic carboxypeptidase 1
 3.00E-35
 +
 +
 +
  
Dj_aH_000_03614HH
 DNA-binding protein SMUBP-2
 4.00E-23
 +
 +
  
  
astrocyte differentiation
 Dj_aH_203_F09
 Neurofibromin
 2.00E-40
 +
 +
 +
 +
Dj_CL0341_002_b2
 Porphobilinogen deaminase
 4.00E-69
 +
 +
 +
 +
Dj_CL0341_001_b2
 Porphobilinogen deaminase
 2.00E-64
 +
 +
 +
 +
oligodendrocyte differentiation
 Dj_aH_203_F09
 Neurofibromin
 2.00E-40
 +
 +
 +
 +
 
 Dj_aH_513_H15.rev
 Exocyst complex component 4
 7.00E-18
 +
 +
 +
 +
  Dj_CL1495_001_b2 Translation initiation factor eIF-2B subunit delta 4.00E-42 + + + +

+ indicate the presence of gene which homologous with D. japonica CNS-development gene in S. mediterranea and the schistosoma.