Table 4. Results of the method considering the nucleotide type.

	Nucleobase			Carbohydrate			Phosphate
Ligand	Precision	Recall	F-score	Precision	Recall	F-score	Precision	Recall	F-score
AMP	0.36	0.26	0.29	0.52	0.31	0.38	0.29	0.43	0.32
ADP	0.41	0.36	0.37	0.32	0.34	0.32	0.82	0.76	0.78
ATP	0.51	0.31	0.38	0.44	0.42	0.43	0.71	0.68	0.69
ANP	0.44	0.43	0.42	0.34	0.38	0.25	0.86	0.69	0.74
FAD	0.51	0.41	0.43	0.75	0.52	0.6	0.82	0.65	0.71
FMN	0.21	0.69	0.32	0.27	0.38	0.21	0.64	0.42	0.47
GDP	0.94	0.59	0.71	0.56	0.52	0.52	0.86	0.80	0.81
GTP	0.45	0.28	0.27	0.23	0.36	0.05	0.78	0.53	0.61
GNP	0.75	0.75	0.78	0.43	0.65	0.56	0.98	0.90	0.92
NAD	0.41	0.56	0.47	0.72	0.55	0.61	0.54	0.39	0.45
NAP	0.7	0.41	0.5	0.8	0.49	0.59	0.56	0.47	0.49

Complete results reporting precision, recall and F-score for all the nucleotide types and for each nucleotide module considered. These results have been obtained using 0.6 Å as R.M.S.D. threshold.