Table 4. Results of the method considering the nucleotide type.
Nucleobase | Carbohydrate | Phosphate | |||||||
Ligand | Precision | Recall | F-score | Precision | Recall | F-score | Precision | Recall | F-score |
AMP | 0.36 | 0.26 | 0.29 | 0.52 | 0.31 | 0.38 | 0.29 | 0.43 | 0.32 |
ADP | 0.41 | 0.36 | 0.37 | 0.32 | 0.34 | 0.32 | 0.82 | 0.76 | 0.78 |
ATP | 0.51 | 0.31 | 0.38 | 0.44 | 0.42 | 0.43 | 0.71 | 0.68 | 0.69 |
ANP | 0.44 | 0.43 | 0.42 | 0.34 | 0.38 | 0.25 | 0.86 | 0.69 | 0.74 |
FAD | 0.51 | 0.41 | 0.43 | 0.75 | 0.52 | 0.6 | 0.82 | 0.65 | 0.71 |
FMN | 0.21 | 0.69 | 0.32 | 0.27 | 0.38 | 0.21 | 0.64 | 0.42 | 0.47 |
GDP | 0.94 | 0.59 | 0.71 | 0.56 | 0.52 | 0.52 | 0.86 | 0.80 | 0.81 |
GTP | 0.45 | 0.28 | 0.27 | 0.23 | 0.36 | 0.05 | 0.78 | 0.53 | 0.61 |
GNP | 0.75 | 0.75 | 0.78 | 0.43 | 0.65 | 0.56 | 0.98 | 0.90 | 0.92 |
NAD | 0.41 | 0.56 | 0.47 | 0.72 | 0.55 | 0.61 | 0.54 | 0.39 | 0.45 |
NAP | 0.7 | 0.41 | 0.5 | 0.8 | 0.49 | 0.59 | 0.56 | 0.47 | 0.49 |
Complete results reporting precision, recall and F-score for all the nucleotide types and for each nucleotide module considered. These results have been obtained using 0.6 Å as R.M.S.D. threshold.