Table 7. Comparison of the method performance on apo and holo structures.
Nucleobase | Carbohydrate | Phosphate | ||||||||||
Structure form | 1 | 3 | 5 | 10 | 1 | 3 | 5 | 10 | 1 | 3 | 5 | 10 |
Holo | 48 | 66 | 67 | 70 | 33 | 50 | 55 | 58 | 53 | 72 | 73 | 80 |
Apo | 38 | 62 | 68 | 71 | 40 | 49 | 52 | 58 | 49 | 66 | 71 | 82 |
Complete results for the LigASite dataset (apo-holo structures), as percentage of analyzed protein structures in which the method places a correct prediction in the first, top three, top five and top ten predictions for the three types of nucleotide modules.