Table 1. Summary of RNA-seq results.

			1 dpi		4 dpi		14 dpi
			carcasses	midguts	carcasses	midguts	carcasses	midguts	salivary glands
Mappinga	DENVI	No.Mosquitoes	30	25	40	40	40	40	40
		No. reads	45,440,807	15,516,385	42,994,979	19,370,451	45,741,611	21,238,385	19,120,751
	B	No.mosquitoes	30	30	30	30	20	20	20
		No. reads	44,100,971	14,875,045	45,026,868	18,529,469	42,659,325	21,336,666	20,258,036
Differential transcript accumulationb		DEseq	13	31	63	96	73	14	257
		Cufflinks	369 (886)	774 (1063)	209 (537)	563 (934)	325 (567)	498 (841)	519 (861)
		Common	10	30	57	94	69	13	190

^aProvides the number of mosquitoes dissected for each sample after either an infectious (DENVI) or non-infectious (B) bloodmeal in specific tissues at discrete days post infection (dpi). All mapping was to the Ae. aegypti transcriptome (AaegL1.2 gene build).

^bLists the number of genes identified by DEseq [35], Cufflinks [36] and common to both with transcripts accumulating differentially in the samples. The numbers in parentheses are the total number of transcripts isoforms detected as significantly differentially accumulated by Cufflinks.