Table 1.
Putative ATAF2 target genes identified via a genomic pull-down assay
| Clone # | AGI | Annotation |
|---|---|---|
| C7* |
AT1G08540 |
RNA Polymerase sigma subunit |
| C9 |
AT3G61111 |
Structural constituent of ribosome |
| C18* |
AT5G61810 |
Pentatricopeptide (PPR) repeat-containing protein |
| C20 |
AT5G39460 |
F-box family protein |
| C22 |
AT2G38940 |
AtPT2, phosphate transporter 2 |
| C23 |
AT4G24660 |
Homeobox protein 22, AtHB22 |
| C25 |
AT3G44470 |
Transposable element gene |
| C28* |
AT4G07840 |
Transposable element gene |
| C30* |
AT5G24350 |
Unknown protein |
| C32* |
AT2G28390 |
SAND family protein |
| C33 |
AT2G02840 |
Unknown protein |
| C34* |
AT1G68907 |
Defensin-like (DEFL) family protein |
| C37 |
AT4G05150 |
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein |
| C38 |
AT1G26620 |
Unknown protein |
| C39* |
AT1G08370 |
DCP1 involved in mRNA decapping |
| C41 |
AT1G59820 |
AMINOPHOSPHOLIPID ATPASE3 |
| C42 |
AT1G70170 |
Matrix metalloproteinase, MMP |
| C45* |
AT3G19080 |
SWIB complex BAF60b domain-containing protein |
| C49 |
AT1G55060 |
Ubiquitin-like gene |
| C52* |
AT3G26540 |
Pentatricopeptide (PPR) repeat-containing protein |
| C56 |
AT3G57220 |
UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase |
| C58 |
AT1G01210 |
DNA-directed RNA polymerase III family protein |
| C59 |
AT5G21482 |
Cytpkinin oxidase |
| C64 |
AT1G14180 |
Protein binding / zinc ion binding |
| C65* |
AT3G01880 |
Unknown protein |
| C66* |
AT5G27902 |
Transposable element gene |
| C81 |
AT2G37160 |
Transducin family protein / WD-40 repeat protein |
| C83* |
AT4G13440 |
Calcium-binding EF hand family protein |
| C85 |
AT3G22300 |
Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10 |
| C87 |
AT4G09584 |
Unknown pseudogene |
| C92 |
AT3G53365 |
Unknown gene |
| C96 |
AT5G13190 |
Unknown protein |
| C98 |
AT3G56600 |
Inositol or phosphatidylinositol kinase/ phosphotransferase |
| C100* |
AT1G70070 |
EMB25, Embryo defective 25 |
| C104* |
AT3G62060 |
Pectinacetylesterase family protein |
| C107 |
AT4G01533 |
Unknown gene |
| C108* |
AT4G19570 |
DNAJ heat shock N-terminal domain-containing protein |
| C109 |
AT3G10912 |
CPUORF63 |
| C110* |
AT4G22980 |
Unknown protein |
| C111 |
AT2G12230 |
Pseudogene, C-1-tetrahydrofolate synthase |
| C113* |
AT3G11700 |
FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR, FLA18 |
| C115 |
AT4G20010 |
Plastid transcriptionally active 9 (PTAC9) |
| C116* |
AT5G56550 |
Oxidative stress 3 (OXS3) |
| C120* |
AT1G24070 |
Transposable element gene |
| C121 |
AT3G33100 |
Transposable element gene |
| C123* |
At3G59050 |
Polyamine oxidase 3 (ATPAO3) |
| C131* | AT1G33010 | F-box family protein |
The identified ATAF2 interacting sequences were upstream and within 3000 bp of a translation start codon. Those marked by an * are upstream and within 1000 bp of a start codon.