Table 1.
Primers used for PCR amplification
| Organism | Target | Left primer (5’ to 3’) | Right primer (5’ to 3’) | Amplicon (bp) |
| A. tetraptera + | 18S rRNA | SY1588 | SY2014 | 684/426 |
| S. obvelata | AGA TCG ATG AAG AAC GCA GT | CAG CGG GTA ATC ACG ACT GA | ||
| Clostridium | 16S RNA | CPIL2356 | CPIL3231 | 876 |
| piliforme | CGA GTT ACA TTT GCA AGC GA | TTC CTT TCC TCG GTT TTC CT | ||
| Helicobacter spp. | 16S RNA | HEP380 CGT GGA GGA TGA AGG TTT TAG | HEP1372 CCG ACT TAA GGC GAA TAC AAC | 992 |
| Rodentolepis nana | 18S rRNA | HNANAF GCG GAA GGA TCA TTA CAC GTT C | HNANAR GCT CGA CTC TTC ATC GAT CCA CG | 664 |
| MHV | Nucleocapsid | MHVN512 GTC ATG AGG CTA TTC CTA CTA | MHVN1027 ATA CAC ATC TTT GGT GGG | 533 |
| MPV/MVM | NS | MPV1059 CAC TGC GCA GGA AAC TAA G | MPV1812 CAA AGT CAC CAG GCA ATG TA | 773 |
| MAV2 | Hexon | K87H310 AAG CGC ACC TAC GAT TAC AT | K87H562 CTT CCT GAA AGC CCA CTC | 252 |
| MNV | Capsid | MNV5033 GGA ACG CTC AGC AGT CTT TG | MNV5542 CAA GAA GAG GGA GTT GAA TG | 509 |
| Murine rotavirus | VP7 | EDIM8 AAA GAG AGA ATT TCC GTT TG | EDIM939 GTA GAA CAC TTG CCA CCA TT | 930 |
| M.musculi + | 18S rRNA | MBO465 | MBO1429 | 964 |
| R. affinis | TAC CCA ATC CCG GCA CGG GG | CTG AAA CGC CGC CTG TCC CT | ||
| M. musculinus | 18S rRNA | COP328 TCG ATT CCG GAG AGG CAG CCT | COP629 ACC ACC GAC AAG ATG GAC CGC | 301 |
| Reovirus | S4 | REO26 TGT CGC AAT GGA GGT G | REO1101 CGG ATC GCC AAT CAT | 1090 |
| TMEV | VP4 | TMEV84 GGC AGA CGG AGA ATG GT | TMEV325 CCA CTG GCA GAC AAA TCA AT | 261 |
| VP0 | TMEV1200 CGA TGA CGT CTT CTG GCC TTC G | TMEV1794 ACC CCT CCG TCC TCG CCA G | 594 | |
| P2 | TMEV4215 CCA CAA GGT GCG GTG CTA AC | TMEV5243 TCC AGG TGA GCC ATA TTC GG | 1018 |