Table 1.
Fur | Site 3 (Zn) | Site 2 (Zn) | Site 3 (Mn) | Site 2 (Mn) | Site 2 (Fe) | ||
---|---|---|---|---|---|---|---|
KZn1 (×1010 M−1) | KZn2 (×1010 M−1) | KZn3 (×106 M−1) | KZn4 (×106 M−1) | KMn1 (×104 M−1) | KMn2 (×104 M−1) | KFed (×104 M−1) | |
WT | 710 ± 250 | 5.4 ± 1.0 | 200 ± 40 | 0.69 ± 0.08 | 620 ± 40 | 4.2 ± 0.4 | 120 ± 10 |
H37A (site 2) | 510 ± 210 | 34 ± 7 | 3.5 ± 0.2 | 3.5 ± 0.2 | 230 ± 20 | 0.13 ± 0.04 | 0.6 |
H95A (site 2) | 1300 ± 900 | 2.3± 0.8 | 190 ± 30 | 3.3 ± 0.2 | 250 ± 30 | n.d. c | n.d. |
H97A (site 2) | 300 ± 40 | 11 ± 1 | 0.67± 0.08 | 0.1 | 110 ± 10 | n.d. | n.d. |
H96A (site 3) | 51 ± 4 | 6.4± 0.8 | 15000 ± 3000 | 2.6 ± 0.2 | 31 ± 2 | n.d. | n.d. |
H132A(site3) | 4.4± 0.7 | 0.023 ± 0.004 | 31 ± 2 | 1.8 ± 0.1 | 22 ± 2 | 5.7 ± 0.2 | 99 ± 20 |
All Zn(II) binding affinities were determined using competition assays with both Mf2 and Quin2. Representative result from multiple experiments (N≥3) is shown. Errors generated by Dynafit are shown to indicate the goodness of fit.
KMn1 was determined by Mf2 competition, while KMn2 was determined by FA-based DNA binding activation assay.
n.d.: not determined
KFe is determined by FA-based assay in 20 mM MOPS, pH 7.5, 0.4 M NaCl, 0.1 mM NAC.