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. 2012 Sep 1;6(5):403–406. doi: 10.4161/chan.21807

graphic file with name chan-6-403-g2.jpg

Figure 2. The canonical local anesthetic-binding sites are not conserved in NaChBac. (A) The sequence alignment of S6 of bacterial and eukaryotic S6 segments, highlighting two sites implicated in use-dependent inhibition of eukaryotic channels. (B) Top-down view of the highlighted residues shown on the right. (C) A concentration response curve was generated with the mean of Idrug/Icontrol obtained from the peak currents after exposing cells to 30 μM, 100 μM, 300 μM, 1 mM and 3 mM (for T220A only) lidocaine. The IC50 for lidocaine, according to the concentration response curve, is ~135 μM for WT(), ~788 μM for T220A() and ~214 μM for F227A (). Representative current traces are obtained after depolarization from the holding potential -120 to -20 mV in the presence of various lidocaine concentrations, peak current sizes were reduced upon application of increasing lidocaine concentrations (right).