TABLE 2.
Domain family architecture across three Toxoplasma strains
| Domain architecture(s)a | No. of genes in: |
||||||
|---|---|---|---|---|---|---|---|
| Coreb | Me49 |
GT1 |
VEG |
||||
| Total | Minus pseudogenes | Total | Minus pseudogenes | Total | Minus pseudogenes | ||
| fam7.fam8 | 18 | 34 | 33 | 35 | 28 | 36 | 20 |
| fam2 | 8 | 15 | 9 | 11 | 6 | 16 | 8 |
| fam3 | 5 | 12 | 11 | 14 | 5 | 15 | 11 |
| fam6.fam2 | 7 | 8 | 7 | 11 | 11 | 9 | 8 |
| fam8 | 6 | 11 | 7 | 9 | 5 | 9 | 6 |
| fam6 | 5 | 8 | 5 | 5 | 3 | 6 | 4 |
| fam8.fam8 | 4 | 4 | 4 | 4 | 4 | 4 | 4 |
| fam1 | 3 | 13 | 7 | 9 | 6 | 13 | 8 |
| fam4{2}.fam2 | 3 | 4 | 4 | 9 | 3 | 7 | 3 |
| fam6.fam1 | 3 | 3 | 3 | 4 | 4 | 5 | 5 |
| fam2.fam2 | 2 | 3 | 3 | 3 | 3 | 2 | 2 |
| fam5.fam1 | 1 | 7 | 3 | 15 | 8 | 10 | 2 |
| fam2.fam1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| fam3.fam2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| (fam5.fam1){2} | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| fam2.fam4{2}.fam2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| fam5 | 0 | 8 | 5 | 5 | 0 | 7 | 2 |
| fam4.fam2 | 0 | 3 | 3 | 3 | 0 | 4 | 3 |
| fam4{3}.fam2 | 0 | 2 | 0 | 0 | 0 | 2 | 0 |
| fam7 | 0 | 2 | 0 | 4 | 0 | 3 | 0 |
| fam4 | 0 | 1 | 0 | 1 | 0 | 2 | 0 |
| fam6.fam6 | 0 | 1 | 0 | 1 | 0 | 1 | 0 |
| fam2{13}.fam3 | 0 | 1 | 1 | 0 | 0 | 1 | 1 |
| fam4.fam4 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| fam1.fam2 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| All | 69 | 144 | 109 | 147 | 90 | 158 | 91 |
a
In famX{N}, X is the number of the SRS domain subfamily and N is the number of consecutive instances of that domain subfamily in the architecture.
b
The core genes are the syntenic gene models, excluding pseudogenes, found in all three strains.