Table I. sRNA sequencing output and mapping to genomic sequences.
Unique sequences from sRNA libraries were mapped using an in-house sRNA bioinformatic platform, allowing one mismatch.
| Genome sRNA Mapping | Roots | Nodules | All Libraries |
|---|---|---|---|
| L. japonicus genome v2.5 | 74,116 (71.2%) | 16,467 (46.2%) | |
| M. loti genomea | 795 (0.76%) | 20,063 (41.1%) | |
| Unknown | 29,140 (28%) | 12,270 (25.1%) | |
| Sequencing Output | |||
| Unique sequences | 104,051 | 48,800 | 147,692 |
| Total reads | 234,060 | 71,802 | 305,862 |
a
Sequences mapping to the L. japonicus genome were removed prior to analysis of the M. loti genome.