Table II. Annotation of sRNA libraries from L. japonicus roots and nodules.
Unique sequences were used for this analysis. For parameters and database references, see “Materials and Methods.”
| sRNA Annotation | 3-h Mock | 3 hpi | 3-d Mock | 3 dpi | Total Roots | 3-wpi Nodules |
|---|---|---|---|---|---|---|
| miscRNAa | 2,382 (25.1%) | 9,953 (25.5%) | 9,716 (26.7%) | 11,761 (28.3%) | 26,279 (25.3%) | 6,439 (13.2%) |
| Known miRNAb | 61 (0.6%) | 196 (0.5%) | 197 (0.5%) | 207 (0.5%) | 457 (0.4%) | 162 (0.3%) |
| DNA repeats | 57 (0.6%) | 178 (0.5%) | 139 (0.4%) | 132 (0.3%) | 490 (0.5%) | 143 (0.3%) |
| Sequencing output | ||||||
| Unique sequences | 9,500 | 39,031 | 36,363 | 41,598 | 104,051 | 48,800 |
| Total reads | 11,932 | 72,129 | 66,945 | 83,054 | 234,060 | 71,802 |