Table 1. Sequences of the primers and probes used in this study.
Name (Location1) | Sequence (5′ to 3′)2 | Orientation | Length (bp)3 |
Tgfbr1-f1 (847 to 873) | GAYAAYAARGAYAAYGGIACITGG | Sense | 359 |
Tgfbr1-r1 (1183 to 1205) | GGIGCCATRTAICKYTTIGTICC | Antisense | |
Tgfbr1-f2 (929 to 955) | TCAACCGTACTGTGGTCAGCATCTCCG | Sense | 91 |
Tgfbr1-r2 (993 to 1019) | CCAATGATCTCCATGTGGAGGTGGGCG | Antisense | |
Tgfbr1-f3 (219 to 242) | GATCTATATTCGAGTCCAAGAAGG | Sense | 1625 |
Tgfbr1-r3 (1821 to 1843) | CATAAAGCTATTCATGTCTTCGG | Antisense | |
Tgfbr1-f4 (1760 to 1784) | GAGGTGTCAGACTGATTTTCAGGAG | Sense | 101 |
Tgfbr1-r4 (1836 to 1860) | ATGTCACAAAGGAAATTCATAAAGC | Antisense | |
Tgfbr1-Pb (1803 to 1827) | TTGTAAGGAAGTTGGATACCGAACT | Probe | |
Tgfbr1-f5 (335to 355) | ATCAACACCTGAGACCGACCT | Sense | 168 |
Tgfbr1-r5 (480 to 502) | GGCACTGATGGTAGGCAAAGAAC | Antisense | |
Actin-f | CAATCTACGAAGGTTATGCC | Sense | 186 |
Actin-r | CCTGTTCAAAGTCAAGTGC | Antisense |
Location represents the position relative to the scallop Tgfbr1 translation start codon.
The bold and italics letter in the probe sequence indicates the position of the SNP.
The size of the amplicon.