Table 4.

Genotypic Association results from 20 SNPs in the Set 2 cases alone and then combined with the Set 1 cases. RAF = relative allele frequency, 2DF = 2 degree of freedom test, Dom = dominant model, Add = additive model, Rec = recessive model

	Set 2 Cases (n = 467) and Controls (n = 279)						Set 1 and 2 Cases (n = 763 ) and Controls (n = 637)
	RAF			Genotypic Association			RAF			Genotypic Association
Marker	Cases	Ctrls	2 DF	Dom	Add	Rec	Cases	Ctrls	2 DF	Dom	Add	Rec
G-1969A	0.006	0.008	0.836	0.555	0.551	0.787	0.009	0.007	0.825	0.554	0.587	0.954
C-1962T	0.054	0.048	0.398	0.585	0.743	0.255	0.054	0.046	0.193	0.270	0.386	0.208
C-1921T	0.001	0.006	0.284	0.124	0.177	0.780	0.002	0.003	0.865	0.599	0.636	0.949
G-1846A	0.001	0.002	0.852	0.572	0.593	0.778	0.001	0.004	0.243	0.111	0.168	0.951
rs10404257	0.264	0.268	0.988	0.885	0.875	0.914	0.263	0.296	0.097	0.032	0.068	0.659
G-197C	0.001	0	0.883	0.781	0.902	0.858	0.002	0.003	0.915	0.694	0.741	0.996
G-181A	0.001	0.002	0.929	0.701	0.717	0.848	0.002	0.002	0.999	0.965	0.967	0.986
A-163C	0.025	0.022	0.455	0.599	0.806	0.332	0.024	0.020	0.485	0.416	0.526	0.475
A-98C	0.004	0.028	0.001	2.00E-04	2.00E-04	0.309	0.011	0.015	0.687	0.526	0.452	0.465
T-85A	0.004	0.008	0.600	0.315	0.351	0.827	0.003	0.006	0.439	0.217	0.267	0.983
G53218A	0.063	0.078	0.512	0.259	0.248	0.665	0.058	0.078	0.088	0.055	0.037	0.163
G57359A	0*	0	NA	NA	NA	NA	0	0.002	0.443	0.255	0.376	0.947
A58329T	0.001	0	0.904	0.874	0.993	0.800	0.001	0	0.823	0.636	0.757	0.951
rs3745859	0.25	0.226	0.556	0.287	0.287	0.620	0.242	0.247	0.886	0.664	0.750	0.925
G62719A	0.001	0.005	0.318	0.142	0.200	0.800	0.004	0.003	0.991	0.925	0.947	0.950
T66655A	0	0.002	0.534	0.300	0.403	0.800	0	0.002	0.245	0.124	0.213	0.933
G69271A	0	0	NA	NA	NA	NA	0	0.001	0.692	0.451	0.566	0.920
C73985T	0.001	0.002	0.880	0.613	0.633	0.801	0.001	0.002	0.820	0.557	0.627	0.951
G79206A	0	0	NA	NA	NA	NA	0.001	0	0.833	0.656	0.777	0.939
C80196T	0.002	0.004	0.827	0.537	0.557	0.802	0.001	0.003	0.637	0.363	0.425	0.944