Table 3.
Single nucleotide polymorphism (SNP) marker loci significantly associated with flowering time (FT), northern corn leaf blight (NCLB), and FT corrected NCLB (NCLBFT) resistance in the different heterotic pools as identified by single marker analysis. pG is the proportion of the explained genotypic variance and SSS is the Stiff Stalk heterotic pool
|
Marker |
Chr. |
Position |
Position |
Allele |
Effect |
pG |
||||
|---|---|---|---|---|---|---|---|---|---|---|
| Trait | Pool | locus | Gene | bin | (cM) | (bp) | P value | 1/2 | Allele 1-2 | (%) |
| FT |
Flint |
M_00049486 |
LE00214 |
8.05 |
197.92 |
145084250 |
4.3e-06** |
C/T |
-2.73 |
1.52 |
| M_00047185 |
LE00173 |
9.02 |
75.54 |
18327094 |
5.2e-06** |
A/T |
-3.61 |
0.00 |
||
| Simultaneous fit |
1.87 |
|||||||||
| Lancaster |
M_00045062 |
MAGI39472 |
3.07 |
346.79 |
195315842 |
1.5e-05* |
C/T |
2.83 |
7.48 |
|
| M_00045063 |
MAGI39472 |
3.07 |
346.79 |
195315842 |
1.5e-05* |
T/G |
2.83 |
7.48 |
||
| M_00048149 |
LE00126 |
8.05 |
187.40 |
128429853 |
5.8e-06** |
G/A |
3.15 |
10.20 |
||
| M_00049487 |
LE00214 |
8.05 |
197.92 |
145084209 |
1.9e-06** |
C/A |
-4.20 |
13.64 |
||
| Simultaneous fit |
22.99 |
|||||||||
| SSS |
M_00048750 |
LE00097 |
2.02 |
95.07 |
5820265 |
2.4e-06** |
G/A |
13.62 |
14.80 |
|
| M_00047756 |
LE00008 |
5.03 |
186.65 |
67510540 |
5.6e-06** |
C/T |
-6.25 |
16.76 |
||
| Simultaneous fit |
21.35 |
|||||||||
| Iodent |
M_00039634 |
AY106491 |
8.03 |
115.95 |
65244298 |
1.7e-05* |
G/A |
3.57 |
18.18 |
|
| M_00044984 |
CL4016 |
8.05 |
191.34 |
131678990 |
1.1e-05* |
T/C |
1.95 |
14.82 |
||
| M_00044985 |
CL4016 |
8.05 |
191.34 |
131678953 |
1.2e-05* |
A/G |
1.98 |
15.18 |
||
| M_00040388 |
AY106357 |
8.05 |
192.10 |
134066305 |
1.2e-06** |
T/C |
2.51 |
17.14 |
||
| M_00042146 |
AY109558 |
8.05 |
192.10 |
135061056 |
1.3e-05* |
T/C |
2.30 |
18.77 |
||
| M_00046254 |
HDT102 |
8.05 |
192.26 |
136131540 |
1.4e-05* |
T/A |
-2.16 |
17.55 |
||
| Simultaneous fit |
25.50 |
|||||||||
| NCLB |
SSS |
M_00046267 |
HAM101 |
2.08 |
322.28 |
212539314 |
1.2e-06** |
C/T |
1.09 |
9.38 |
| M_00046268 |
HAM101 |
2.08 |
322.28 |
212539211 |
7.3e-07** |
T/C |
1.10 |
11.30 |
||
| Simultaneous fit |
9.38 |
|||||||||
| Iodent |
M_00048759 |
LE00099 |
3.05 |
227.44 |
160670670 |
1.4e-05* |
A/G |
1.78 |
6.05 |
|
| M_00044733 |
AZM452718 |
5.03 |
187.81 |
69119810 |
5e-06** |
G/A |
-0.90 |
8.49 |
||
| M_00046712 |
AY103770 |
9.03 |
111.71 |
99416354 |
6e-06** |
G/C |
1.25 |
10.33 |
||
| M_00046713 |
AY103770 |
9.03 |
111.71 |
99416416 |
9.7e-07** |
T/G |
-1.32 |
11.49 |
||
| M_00040630 |
AY105678 |
9.05 |
151.55 |
130918789 |
9.1e-06* |
C/T |
-0.81 |
10.02 |
||
| M_00040631 |
AY105678 |
9.05 |
151.55 |
130918887 |
1.1e-05* |
T/C |
-0.79 |
9.08 |
||
| Simultaneous fit |
28.94 |
|||||||||
| NCLBFT |
SSS |
M_00046331 |
HAM101 |
2.08 |
322.10 |
212537417 |
5.9e-06** |
A/T |
-1.01 |
0.00 |
| Simultaneous fit |
0.00 |
|||||||||
| Iodent |
M_00040577 |
AY105760 |
9.03 |
99.89 |
50762538 |
1.3e-05* |
T/G |
0.90 |
12.87 |
|
| M_00040630 |
AY105678 |
9.05 |
151.55 |
130918789 |
5e-07** |
C/T |
-0.97 |
18.89 |
||
| M_00040631 |
AY105678 |
9.05 |
151.55 |
130918887 |
5.3e-07** |
T/C |
-0.96 |
15.99 |
||
| Simultaneous fit | 23.20 |
*Significant at P <0.05 with amplicon-wise Bonferroni correction.
**Significant at P <0.05 with Bonferroni correction.