Table 1. Summary of the materials and results of pyrosequencing.
Category | Library 1 | Library 2 | Library 3-1 | Library 3-2 | Total |
RNA source | TotalRNA | mRNA | mRNA | mRNA | |
cDNA amplification | NuGEN | NuGEN | Roche Std. | Roche Std. | |
Run regions | 1/8 | 1/8 | 1/8 | 1/8 | |
Valid reads | 76 892 | 110 009 | 122 436 | 133 578 | 442 915 |
Valid reads(minus rRNA) | 32 093 | 93 009 | 56 899 | 65 360 | 247 361 |
Number ofcontigs | 17 328 | ||||
Number ofsingletons | 31 921 | ||||
Average sizeof contigs | 549 | ||||