Table 2. Summary of full genome sequenced viruses generated in this study.
Virus Reference Numbera | Host | Specimenb | Date collected | Origin (Outbreak/Location) | Sequencinga | Coverage | GenBank Accesion Number | |
WRLFMD | SAP/DTU | |||||||
BUL/1/1010 | - | Wild boar | E | 30/12/10 | Bulgaria, Index case | WRLFMD | 6.53 | JX040485 |
- | 12LPN1c | Cattle | E | 14/01/11 | Outbreak 1, Bulgaria | DTU | 2.34 | JX066664 |
- | 12LPN3c | Cattle | E | 16/01/11 | Outbreak 2, Bulgaria | DTU | 2.47 | JX066665 |
BUL/11/2011 | - | Cattle | E | 18/03/11 | Outbreak 4, Bulgaria | WRLFMD | 5.71 | JX040486 |
BUL/20/2011 | - | Cattle | E | 24/03/11 | Outbreak 6, Bulgaria | WRLFMD | 5.14 | JX040487 |
BUL/26/2011 | - | Cattle | E | 23/03/11 | Outbreak 5, Bulgaria | WRLFMD | 4.28 | JX040488 |
BUL/30/2011 | - | Cattle | E | 24/03/11 | Outbreak 7, Bulgaria | WRLFMD | 6.41 | JX040489 |
BUL/32/2011 | - | Cattle | E | 24/03/11 | Outbreak 8, Bulgaria | WRLFMD | 7.40 | JX040496 |
TUR/18/2010 | - | Cattle | E | 09/07/10 | Kurtoğlu, Merkez, Gümü°hane, Turkey | WRLFMD | 3.83 | JX040491 |
- | TUR/840/2010d | Cattle | E | 15/07/10 | Asagikupkiran, Merkez, Agri, Turkey | WRLFMD | 4.10 | JX040493 |
- | TUR/868/2010d | Cattle | E | 20/07/10 | Sevinc, Odunpazari, Eskisehir, Turkey | WRLFMD | 6.48 | JX040494 |
- | TUR/883/2010d | Cattle | E | 23/07/10 | Kayi, Merkez, Kastamonu, Turkey | WRLFMD | 5.38 | JX040495 |
- | TUR/926/2010d | Cattle | E | 26/07/10 | Kozluca, Ýnegöl, Bursa, Turkey | WRLFMD | 4.47 | JX040496 |
- | TUR/1003/2010d | Cattle | E | 10/08/10 | Yavu, Yildizeli, Sivas, Turkey | WRLFMD | 5.79 | JX040497 |
TUR/36/2010 | - | Cattle | E | 13/08/10 | Yenice, Izmit, Kocaeli, Turkey | WRLFMD | 4.49 | JX040492 |
- | TUR/1086/2010d | Cattle | E | 16/08/10 | Suleymaniye, Antalya, Turkey | WRLFMD | 6.01 | JX040498 |
TUR/8/2011 | - | Cattle | E | 14/01/11 | Kirca, Sultandagi, Afyonkarahisar, Turkey | WRLFMD | 6.40 | JX040499 |
TUR27/2011 | - | Cattle | E | 01/01/11 | Kozansiki,Kavak,Samsun, Turkey | WRLFMD | 4.75 | JX040500 |
ISR/2/2011 | - | Cattle | CC | 11/03/11 | Kibbutz Bet Zera, Israel | WRLFMD | 5.08 | JX040501 |
WRLFMD = World Laboratory Reference for Foot-and-Mouth Disease, The Pirbright Institute, United Kingdom; SAP = Foot-and-Mouth Disease Institute, Turkey; DTU = National Veterinary Institute, Denmark.
E = Epithelium; CC = Cell culture.
Sample nomenclature assigned by DTU.
Sample nomenclature assigned by SAP.