Figure 3. Efficiency of eight methods in associating regulatory genes in Arabidopsis.

The numbers of positive TFs in top 25 clusters identified by TF-Cluster [1] when eight gene association methods were used to construct the coexpression network of all TFs (1640 in Arabidopsis ATH1 platform) for network decomposition to recognize the positive TF clusters regulating different biological processes. These TFs were from Nie at al Table 2 in [1] where literature evidence that support them to be positive genes are shown.