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. 2012 Dec;192(4):1447–1454. doi: 10.1534/genetics.112.145078

Figure 1 .

Figure 1 

Estimate of mutation rate as a function of quality cutoff. The GQ is the PHRED scaled confidence that the genotype of each sample is correct. The mutation rate levels off at ∼GQ > 20. For each GQ cutoff we applied an equivalent cutoff to determine the total number of callable sites.