Table 4. Correlation coefficients between the P-values produced by different GWAS methods.
| R-LM | R-Q | EMMAX-K | EMMAX-QK | EMMAX-KLA | EMMAX-KLAQ | TASSEL-K | TASSEL-QK | R-LA | R-LAQ | |
|---|---|---|---|---|---|---|---|---|---|---|
| R-LM | 1 | 0.1684 | 0.7341 | 0.2024 | 0.0753 | 0.0936 | 0.6397 | 0.1460 | 0.0850 | 0.0566 |
| R-Q | 1 | 0.2540 | 0.2847 | 0.1686 | 0.0557 | 0.3073 | 0.8103 | 0.2886 | 0.0989 | |
| EMMAX-K | 1 | 0.3338 | 0.1374 | 0.1241 | 0.8153 | 0.2603 | 0.0977 | 0.0619 | ||
| EMMAX-QK | 1 | 0.2493 | 0.4173 | 0.2888 | 0.2542 | 0.1190 | 0.0492 | |||
| EMMAX-KLA | 1 | 0.2683 | 0.1084 | 0.1289 | 0.2208 | 0.1027 | ||||
| EMMAX-KLAQ | 1 | 0.0869 | 0.0408 | 0.0849 | 0.0738 | |||||
| TASSEL-K | 1 | 0.3425 | 0.1039 | 0.0630 | ||||||
| TASSEL-QK | 1 | 0.2476 | 0.0947 | |||||||
| R-LA | 1 | 0.2654 | ||||||||
| R-LAQ | 1 |