Table 3.
Selected genes that are differently expressed between pre- and postoperative samples.
| Gene name | Agilent ID | Description | SAM | Fold Change | |||
|---|---|---|---|---|---|---|---|
| Called | FDR | q-val | Mean | Range | |||
| CX3CL1 | A_24_P390495 | Chemokine (C-X3-C motif) ligand 1 (CX3CL1), mRNA (NM_002996) | 21 | 0 | 0 | 2.99 | 0.90–4.09 |
| CYP2D6 | A_23_P143734 | Cytochrome P450, family 2, subfamily D, polypeptide 6 (CYP2D6), transcript variant 1, mRNA (NM_000106) | 18 | 0 | 0 | 1.65 | 0.58–3.55 |
| A_23_P155123 | 103 | 2.08 | 1.55 | 1.51 | 0.46–3.38 | ||
| CYR61 | A_23_P46426 | Cysteine-rich, angiogenic inducer, 61 (CYR61), mRNA (NM_001554) | 163 | 1.75 | 1.65 | 4.07 | 0.61–12.88 |
| A_24_P370946 | 196 | 1.82 | 1.79 | 5.51 | 0.36–22.80 | ||
| DUSP1 | A_23_P110712 | Dual specificity phosphatase 1 (DUSP1), mRNA (NM_004417) | 217 | 2.3 | 2.20 | 3.18 | 0.49–12.69 |
| DUSP9 | A_24_P417189 | Dual specificity phosphatase 9 (DUSP9), mRNA (NM_001395) | 7 | 0 | 0 | 2.12 | 1.15–2.88 |
| FOSB | A_23_P429998 | FBJ murine osteosarcoma viral oncogene homolog B (FOSB), transcript variant 1, mRNA (NM_006732) | 203 | 2.11 | 2.01 | 2.79 | 0.96–24.26 |
| MALAT1 | A_24_P497244 | Metastasis associated lung adenocarcinoma transcript 1 (nonprotein coding) (MALAT1), noncoding RNA (NR_002819) | 3 | 0 | 0 | 3.54 | 1.31–9.97 |
| MAPK3 | A_23_P37910 | Mitogen-activated protein kinase 3 (MAPK3), transcript variant 1, mRNA (NM_002746) | 42 | 1.70 | 1.30 | 2.01 | 0.40–2.55 |
| NFRκB | A_23_P24485 | nuclear factor related to kappaB binding protein (NFRκB), transcript variant 2, mRNA (NM_006165) | 183 | 1.95 | 1.79 | 1.61 | 0.63–3.25 |
| RAB17 | A_23_P5778 | RAB17, member RAS oncogene family (RAB17), mRNA (NM_022449) | 10 | 0 | 0 | 1.84 | 0.23–4.36 |
| RASAL1 | A_23_P139600 | RAS protein activator like 1 (GAP1 like) (RASAL1), mRNA (NM_004658) | 140 | 2.04 | 1.65 | 1.46 | 0.38–2.41 |
| RASD1 | A_23_P118392 | RAS, dexamethasone-induced 1 (RASD1), mRNA (NM_016084) | 105 | 2.04 | 1.55 | 3.14 | 0.88–21.55 |
| A_24_P348006 | 27 | 0 | 0 | 2.69 | 0.85–12.90 | ||
| RHOB | A_23_P51136 | ras homolog gene family, member B (RHOB), mRNA (NM_004040) | 16 | 0 | 0 | 1.99 | 0.51–2.96 |
| RHOU | A_23_P114814 | ras homolog gene family, member U (RHOU), mRNA (NM_021205) | 122 | 1.75 | 1.55 | 2.68 | 0.71–3.65 |
| RHOV | A_23_P117912 | Rho-related GTP-binding protein RhoV (Wnt-1 responsive Cdc42 homolog 2)(WRCH-2)(CDC42-like GTPase 2)(GTP-binding protein-like 2) (Rho GTPase-like protein ARHV) (ENST00000220507) | 184 | 1.94 | 1.79 | 1.60 | 0.25–5.45 |