Table 1.
Mapsembler time and memory requirements on large data-sets
| Reads data set | Mapping time (s) | Assembly time (s) | Total time (s) | Memory (MB) |
|---|---|---|---|---|
|
S10K |
<1 |
<1 |
1 |
<1.5 |
|
S100K |
1 |
2 |
5 |
<1.5 |
|
S1M |
14 |
6 |
40 |
<1.5 |
|
S10M |
170 |
95 |
442 |
<1.5 |
| S100M | 1813 | 903 | 3983 | <1.5 |
Time and memory requirements for targeted assembly of 10 starters using increasingly large human genome read data sets. Mapping time corresponds to the mapping phase (Algorithm 1, Steps 1 to 5). Assembly time corresponds to the assembly phase (Steps 18 to 14) per iteration.