Table 1. Single nucleotide polymorphisms associated to direct calving ease and located on BTA6 in the region comprised between 37 and 39 millions of base pairs sorted according to their position on the Illumina BovineSNP50 panel.
SNP name | Position (bp) | gene | P* | Q* | fB | βB |
Hapmap30134-BTC-034283 | 37,852,401 | NA | 2.38E-09 | 1.94E-05 | 0.45 | 8.43E-02 |
Hapmap26308-BTC-057761 | 37,963,148 | LAP3 | 8.17E-15 | 3.38E-10 | 0.40 | −1.19E-01 |
ARS-BFGL-NGS-112812 | 38,014,255 | NA | 3.87E-06 | 1.60E-02 | 0.35 | 6.85E-02 |
ARS-BFGL-NGS-45457 | 38,102,328 | NA | 7.97E-13 | 1.65E-08 | 0.45 | −9.97E-02 |
Hapmap27083-BTC-041166 | 38,212,942 | LCORL | 2.58E-07 | 1.52E-03 | 0.36 | 7.50E-02 |
Hapmap23507-BTC-041133 | 38,233,089 | LCORL | 3.89E-07 | 2.01E-03 | 0.36 | 7.39E-02 |
Hapmap31285-BTC-041097 | 38,256,890 | LCORL | 4.11E-11 | 4.24E-07 | 0.48 | −9.30E-02 |
Hapmap33628-BTC-041023 | 38,326,148 | LCORL | 7.12E-12 | 9.80E-08 | 0.46 | −9.85E-02 |
Hapmap25414-BTC-034877 | 38479644 | NA | 2.45E-05 | 7.78E-02 | 0.27 | 6.71E-02 |
Hapmap32207-BTC-034871 | 38,500,210 | NA | 2.45E-05 | 7.78E-02 | 0.27 | 6.71E-02 |
Hapmap28546-BTC-072715 | 38,558,527 | NA | 4.84E-07 | 2.22E-03 | 0.38 | 7.38E-02 |
Hapmap27537-BTC-060891 | 38,638,963 | NA | 1.04E-05 | 3.90E-02 | 0.39 | 6.68E-02 |
Hapmap31044-BTC-071337 | 38,729,867 | NA | 2.38E-09 | 1.94E-05 | 0.46 | 8.66E-02 |
SNP name, position, the gene in which they are located (if any), significance levels both unadjusted (P*) and corrected for multiple testing (Q*), allelic frequencies (fB) and effects of the minor allele (βB).