Table 3.
Results for fits for a data set (290,000 data points, sampling interval τ = 0.05 ms) collected from type-II IP3R at 10 μM IP3, 5 mM ATP, 50 nM Ca2+ to different models
| Model | qij[ms−1] | qji[ms−1] | Likelihood |
|---|---|---|---|
| C1–O2 | q12 = 2.684893 ± 0.070417 | q21 = 2.721870 ± 0.072489 | −141,814 |
|
Q21 |
q12 = 0.039019 ± 0.003728 | q21 = 0.086724 ± 0.008305 | −125,330 |
|
q13 = 9.787732 ± 0.101025 |
q31 = 3.250568 ± 0.035998 |
||
|
Q31 |
q12 = 1.125150 ± 0.036311 | q21 = 0.094523 ± 0.008178 | −125,072 |
| q23 = 0.004706 ± 0.001427 | q32 = 0.011629 ± 0.003210 | ||
|
q24 = 10.065905 ± 0.139341 |
q42 = 3.272794 ± 0.047411 |
||
| Q41C1–C2–C3–C4–O5 | q12 = 0.019692 ± 0.007848 | q21 = 0.329510 ± 0.169228 | −125,082 |
| q23 = 0.493762 ± 0.133622 | q32 = 0.137882 ± 0.052847 | ||
| q34 = 1.322551 ± 0.100999 | q43 = 0.110575 ± 0.009022 | ||
| q45 = 10.110514 ± 0.119087 | q54 = 3.272045 ± 0.034769 | ||
Mean values and standard deviations are shown for runs of 60,000 iterations (burn-in: 30,000 iterations). Convergence plots for the model Q31 with the best likelihood score are shown in Fig. 7.