Table 4. Potential novel miRNAs found in Prunus persica.
| miRNA ID | Sequence (5p) | Sequence (3p) | Length (nt) | Pre-miRNA Length (nt) | Count | Location * | Arm | MFE (kcal/mol) |
| LC-m0007 | - | UUGUUUAAAACCCGUCGUCUCUA | 23 | 186 | 7 | scaffold_1:8956580:8956765 | + | −60.70 |
| LC-m0026 | GGATTGTTTAGTGTGCGGATT | TACGCATGCTAAACAATCCGG | 21 | 200 | 248 | scaffold_1:2565511:2565710 | − | −75.40 |
| LC-m0057 | - | CGAAUUAUUUUUCGUCGCGCAU | 22 | 197 | 11 | scaffold_2:6713696:6713892 | + | −98.80 |
| LC-m0066 | GGAGCAUCAUCAAGAUUCACA | - | 21 | 105 | 7 | scaffold_2:22285766:22285870 | + | −51.40 |
| LC-m0085 | - | TCTGGTAGATAGAGGCTTGCAGA | 23 | 343 | 15 | scaffold_31:20483:20825 | + | −78.41 |
| LC-m0116 | - | UCUUAGUUGGCAUCAGGGGAG | 21 | 89 | 18 | scaffold_3:15171393:15171481 | − | −47.20 |
| LC-m0129 | - | GAUUCGAUGGAUCGUGAAUCGGA | 23 | 91 | 9 | scaffold_4:18011756:18011846 | + | −25.90 |
| LC-m0207 | CAGTTTGGTTCGGTTCGGTTTTA | - | 23 | 273 | 8 | scaffold_7:9303778:9304050 | − | −59.03 |
| LS-m0011 | GUGGGUUGGUCACGAUCUGGACA | - | 23 | 73 | 7 | scaffold_1:23025602:23025674 | + | −22.10 |
| LS-m0017 | GGGUGAGAGGUUGCCGGAAAGA | UUUCCGAAACCUCCCAUUCCAA | 22 | 120 | 233 | scaffold_1:29646062:29646181 | + | −47.20 |
| LS-m0064 | UAAAAGAAAAGGAUGUGCUAA | - | 21 | 96 | 12 | scaffold_2:22728227:22728322 | + | −56.10 |
| LS-m0068 | UCAUUAUAAAGGAGCUGAGCG | - | 21 | 81 | 18 | scaffold_2:3509153:3509233 | − | −37.20 |
| LS-m0071 | UCAUUAUAAAGGAGCUGAGCG | - | 21 | 81 | 18 | scaffold_2:3663645:3663725 | − | −35.10 |
| LS-m0072 | UCAUUAUAAAGGAGCUGAGCG | - | 21 | 81 | 18 | scaffold_2:3702370:3702450 | − | −35.10 |
| LS-m0146 | - | ACCCCGGGAAGCACACCAUUC | 21 | 104 | 32 | scaffold_4:24898628:24898731 | + | −76.80 |
| LS-m0229 | AUUUUGACAAUUCCGGUGACG | UCACCGGAAUUGUCAAAAUGA | 21 | 112 | 70 | scaffold_7:18921383:18921494 | + | −65.80 |
| RC-m0001 | UGCGUGGCGUAGGUUAUCCGG | GUGUUGAUUGUACCGGCGUAUG | 22 | 84 | 9 | scaffold_10:842623:842706 | − | −36.60 |
| RC-m0006 | UGGGUUUAUAAGGAGUUGAGCUA | - | 23 | 94 | 10 | scaffold_16:367482:367575 | − | −44.80 |
| RC-m0010 | - | ACGUGUCAAGUGUUGAGAAUGGU | 23 | 132 | 12 | scaffold_1:4213465:4213596 | + | −73.00 |
| RC-m0027 | GGGUGAGAGGUUGCCGGAAAGA | UUUCCGAAACCUCCCAUUCCAA | 22 | 120 | 181 | scaffold_1:29646062:29646181 | + | −47.20 |
| RC-m0030 | - | GAAAUUUCGUCGGGAAAGGUU | 21 | 84 | 11 | scaffold_1:30447571:30447654 | + | −26.40 |
| RC-m0032 | UGUAAUCCAAGAGAUCAGGACUG | GUCUCGAUCUCUUAGACCACAGG | 23 | 75 | 11 | scaffold_1:31233982:31234056 | + | −34.30 |
| RC-m0063 | GCTTCTATCTCTTCCTTTAGC | TGAAGGAAGAGATAGAAGCGC | 21 | 127 | 264 | scaffold_1:41019402:41019528 | − | −79.00 |
| RC-m0146 | TTACATACTTCTAATCTCGGCT | - | 22 | 116 | 66 | scaffold_4:14813352:14813467 | + | −64.90 |
| RS-m0062 | - | UAUGGCAGGAAAGAAUGUGA | 20 | 85 | 31 | scaffold_2:2899244:2899328 | + | −42.10 |
| RS-m0084 | AAAAGTATTACACGTCGGTTACA | - | 23 | 344 | 113 | scaffold_2:3555213:3555556 | − | −75.30 |
| RS-m0110 | CGUGGUAUCAGAGUCAUGUUA | - | 21 | 100 | 9 | scaffold_3:8575410:8575509 | + | −42.00 |
| RS-m0136 | - | UCUUAGUUGGCAUCAGGGGAG | 21 | 89 | 38 | scaffold_3:15171393:15171481 | − | −47.20 |
| RS-m0154 | - | ACCCCGGGAAGCACACCAUUC | 21 | 104 | 147 | scaffold_4:24898628:24898731 | + | −76.80 |
| RS-m0177 | - | UUAUUGGUCGGGGAUAGCAAA | 21 | 104 | 288 | scaffold_5:190969:191072 | + | −56.80 |
| RS-m0189 | GGATTGTTTAGTGTGCGGATT | TCCGCATGCTAAACAATCCGG | 21 | 206 | 180 | scaffold_5:316931:317136 | − | −84.10 |
| RS-m0263 | AUCAUGUCACCAGGAACCAAG | UGAUUCUUGUUGACGUGAUGU | 21 | 104 | 2085 | scaffold_7:2887134:2887237 | − | −69.40 |
*
The location of the hairpin precursor(s) on reference of Prunus persica genomic scaffolds.