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. 2012 Dec 6;7(12):e51052. doi: 10.1371/journal.pone.0051052

Table 3. Functional identity and gene ontology description of the isolated unigenes corresponding to the “Repressed Group” (RG) unigenes.

Unigene Clone GenBank # NCBI accession no. NCBI and ESTreeDB functional annotation TAIR Unigene functional annotation Arabidopsis ortholog id
Expression pattern: 111011
R1 JK845765 XM_002275269 Lysine-specific demethylase REF6-like (V. vinifera). REF6 (Relative of Early Flowering 6). At3g48430
R2 JK845766 XM_002284516 calcium-transporting ATPase 4, endoplasmic reticulum-type-like (V. vinifera). ECA4 (calcium-transporting ATPase). At1g07670
R3 JK845767 AF179295 Putative actin depolymerizing factor (ADF) mRNA (M. domestica). ADF4 (Actin Depolymerizing Factor 4). At5g59890
R4 JK845768 EF534108 Chloroplast sequence (Beta vulgaris). PCLPP (plastid-encoded CLP P). Atcg00670
R5 JK845769 XM_002279489 Hypothetical protein LOC100246828 (V. vinifera). PLAC8 family protein. At4g23470
R6 JK845770 XM_002318247 Predicted protein (P. trichocarpa). PME1 (Pectin Methylesterase Inhibitor 1). At4g12390
R7 JK845771 AF086759 Uncharacterized protein LOC100801770 (G. max). ESP1 (hydroxyproline-rich glycoprotein family protein). At1g73840
R8 JK845772 XM_002321350 Predicted protein (P. trichocarpa). Yippee family putative zinc-binding protein. At4g27740
R9 JK845773 BT051272 Clone MTYF1_F2_F3_F41G-D-3 unknown mRNA (Medicago truncatula). J8 (Chaperone DnaJ-domain superfamily protein). At1g80920
R10 JK845774 DQ34532 Eukaryotic translation initiation factor eIF5A (Rosa chinensis). eIF-5A 1 (Eukaryotic translation initiation factor 5A-1). At1g26630
R11 JK845775 XM_003549582 Serine/threonine-protein kinase HT1-like (G. max). Protein kinase superfamily protein. At3g01490
R12 JK845776 XM_003529300 Protein E6-like (G. max). Unknown protein. At1g03820
R13 JK845777 XM_002325022 Predicted protein (P. trichocarpa). Unknown protein. At1g05205
R14 JK845778 XM_002275106 Two-component response regulator ARR1-like (V. vinifera). ARR11 (response regulator 11). At1g67710
R15 JK845779 XM_002326613 Predicted protein (P. trichocarpa). Ribosomal protein L23/L15e family protein. At4g16720
R16 JK845780 XM_002531538 Putative programmed cell death protein (R. communis). RNA binding. At3g11964
R17 JK845781 XM_002277369 CBL-interacting protein kinase 14 (CIPK14) mRNA (V. vinifera). CIPK21 (CBL-interacting protein kinase 2. At5g57630
R18 JK845782 BT089621 Clone SS0AEB28YD15 (V. vinifera). NOI (RPM1-interacting protein 4 (RIN4) family protein). At5g55850
R19 JK845783 XM_003540551 RNA-binding protein 38-like (G. max). RNA-binding (RRM/RBD/RNP motifs) family protein. At1g33470
R20 JK845784 XM_002520806 Putative alpha-galactosidase/alpha-n-acetylgalactosaminidase, mRNA (R. communis). Melibiase family protein. At3g56310
R21 JK845785 XM_002282890 Elicitor-responsive protein 3-like (V. vinifera). C2 calcium/lipid-binding and GRAM domain containing Protein. At5g50170
R22 JK845786 XM_002278821 Histone H3.3-like (V. vinifera). Histone superfamily protein. At5g10980
R23 JK845787 EU919653 Protein kinase haiku2 precursor (P. dulcis). Leucine rich repeat (LRR) kinase IKU2 (HAIKU2). At3g19700
R24 JK845788 EF147627 Clone WS0123_O22 unknown mRNA (P. trichocarpa). Calmodulin binding protein (IQD14). At2g43680
R25 JK845789 XM_002278482 Acyl-CoA synthetase short-chain family member 2 (ACSS2)(V. vinifera). ACS (acetyl-CoA synthetase). At5g36880
R26 JK845790 NM_001254526 Guanine nucleotide-binding protein subunit beta-like protein-like (G. max). RACK1A (Transducin/WD40 repeat-like superfamily protein). At1g18080
R27 JK845791 XM_002308368 Predicted protein (P. trichocarpa). Putative endomembrane protein 70. At5g25100
R28 JK845792 XM_002326378 1,4-alpha-glucan branching enzyme(P. trichocarpa). SBE2.2 (Starch Branching Enzyme 2.2). At5g03650
R29 JK845793 XM_002528381 Putative Rop guanine nucleotide exchange factor, mRNA (R. communis). ROPGEF1 (Rho guanyl-nucleotide exchange factor). At4g38430
R30 JK845794 XM_002282054 Ras-related protein Rab2BV-like (V. vinifera). ATRABA2B (Arabidopsis RAB GTPase homolog A2B). At1g07410
R31 JK845795 EF640712 Pdbcs-L61 putative ethylene responsive protein (P. dulcis) Adenine nucleotide alpha hydrolases-like superfamily protein. At1g68300
R32 JK845796 XM_003538309 Uncharacterized protein LOC100783844 (G. max). Unknown protein. At1g47640
R33 JK845797 XM_002275701 Uncharacterized LOC100263264 (V. vinifera). Protein of unknown function (DUF544). At4g11860
R34 JK845798 XM_002267027 Putative vesicle-associated membrane protein 726-like(V. vinifera). VAMP721 (Vesicle-Associated Membrane Protein 721). At1g04750
R35 JK845799 XM_002512435 Putative syntaxin, mRNA (R. communis). SYP43 (Syntaxin of plants 43). At3g05710
R36 JK845800 XM_002274908 Probable protein phosphatase 2C 44-like (V. vinifera). PIA1 (PP2C induced by AVRRPM1). At2g20630
R37 JK845801 XM_002331064 Predicted protein (P. trichocarpa). Lung seven transmembrane receptor family protein. At5g18520
R38 JK845802 XM_002284976 DNA-binding protein S1FA2-like (V. Vinifera). DNA-binding S1FA family protein. At2g37120
R39 JK845803 AF336307 Auxin-repressed protein like-protein mRNA (M. domestica). Dormancy/auxin associated family protein. At2g33830
R40 JK845804 GU462127 Pectase lyase mRNA (P. persica). Pectate lyase family protein. At3g24670
R41 JK845805 GQ372916 Isolate PMG12 transposon Ty3-gypsy nonfunctional reverse transcriptase gene (Prunus mume). Transposable element gene. At2g10330
Expression pattern: 111000
R42 JK845806 XM_002271609 Rae1-like protein At1g80670 (V. vinifera). Transducin/WD40 repeat-like superfamily protein. At1g80670
Expression pattern: 011000
R43 JK845807 XM_003538456 Gamma-glutamyltranspeptidase 1-like (G. max). GGT3 (Gamma-Glutamyl Transpeptidase 3). At1g69820
Expression pattern: 001000
R44 JK845808 XM_002320810 Hypothetical protein (P. trichocarpa). ATAGP20 (Arabinogalactan Protein 20). At3g61640