Table 2. Transcript Abundance That Is Significantly Altered in the Arabidopsis gdh1-2-3 Mutants Compared with the Wild Type.
| Organ | Regulation | AG | Description | Average FC | FDR (%) |
|---|---|---|---|---|---|
| Root | Down | AT5G18170 | GDH1 | 0.07 | 1.5E-07 |
| AT2G14247 | Unknown protein | 0.21 | 4.4E-07 | ||
| AT4G10265 | Unknown protein,wound-responsive protein, putative | 0.27 | 9.8E-07 | ||
| AT1G72060 | Ser-type endopeptidase inhibitor heat shock protein binding | 0.30 | 2.6E-06 | ||
| AT3G48450 | Unknown protein,nitrate-responsive NOI protein, putative | 0.29 | 2.1E-06 | ||
| AT1G21520 | Unknown protein | 0.35 | 4.1E-06 | ||
| AT4G39675 | Unknown protein | 0.36 | 3.8E-06 | ||
| AT2G17850 | Unknown protein | 0.32 | 4.0E-06 | ||
| AT1G33055 | Unknown protein | 0.33 | 3.9E-06 | ||
| AT4G27110 | Cobra-like protein 11 precursor | 0.36 | 3.8E-06 | ||
| AT3G13520 | Arabinogalactan protein 12 | 0.38 | 4.8E-06 | ||
| AT2G15830 | Unknown protein | 0.35 | 4.9E-06 | ||
| AT1G12805 | Nucleotide binding | 0.34 | 4.6E-06 | ||
| AT3E49170 | EUGENE prediction | 0.35 | 5.7E-06 | ||
| AT2G38870 | Ser-type endopeptidase inhibitor | 0.39 | 5.9E-06 | ||
| AT2G01090 | Ubiquinol-cytochrome c reductase complex 7.8-kD protein, putative | 0.40 | 6.7E-06 | ||
| AT2G21640 | Unknown protein | 0.40 | 6.4E-06 | ||
| AT3G05880 | Rare cold-inducible 2A/low-temperature and salt-responsive protein | 0.41 | 6.4E-06 | ||
| AT3G11830 | ATP binding/protein binding, chaperonin, putative | 0.41 | 6.4E-06 | ||
| AT2G33585 | Unknown protein | 0.38 | 6.2E-06 | ||
| AT5G64790 | Glycosyl hydrolase family 17 protein | 0.38 | 6.1E-06 | ||
| AT3G02790 | Transcription factor, zinc finger (C2H2 type) family protein | 0.41 | 6.7E-06 | ||
| AT2G37750 | Unknown protein | 0.42 | 7.5E-06 | ||
| AT5G53650 | Unknown protein | 0.42 | 8.9E-06 | ||
| AT2G21185 | Unknown protein | 0.40 | 8.6E-06 | ||
| AT5G12880 | Unknown protein, Pro-rich family protein | 0.42 | 9.4E-06 | ||
| AT4G13520 | Small acidic protein 1 | 0.43 | 9.3E-06 | ||
| AT5G03545 | Unknown protein | 0.42 | 9.1E-06 | ||
| AT1G68450 | Unknown protein, VQ motif–containing protein | 0.41 | 8.9E-06 | ||
| AT5G10040 | Unknown protein | 0.36 | 8.6E-06 | ||
| AT3G15580 | Encodes APG8, a component of autophagy conjugation pathway | 0.44 | 9.6E-06 | ||
| AT2G05440 | Unknown protein,Gly-rich protein | 0.41 | 9.6E-06 | ||
| Root | Up | AT3G16400 | Nitrile specifier protein1 | 2.75 | 1.0E-06 |
| AT5G42020 | ATP binding, luminal binding protein 2 | 2.45 | 3.5E-06 | ||
| AT3G02470 | S-adenosylmethionine decarboxylase (polyamine biosynthesis) | 2.34 | 5.5E-06 | ||
| AT3G09440 | ATP binding, heat shock cognate 70-kD protein 3 | 2.36 | 4.2E-06 | ||
| AT1G20160 | Ser-type endopeptidase | 2.35 | 3.4E-06 | ||
| AT4G05230 | Ubiquitin family protein | 2.29 | 3.9E-06 | ||
| AT4G13770 | Cytochrome p450 83A1 | 2.26 | 3.4E-06 | ||
| AT3G16460 | Jacalin lectin family protein | 2.24 | 3.2E-06 | ||
| AT3G15950 | Unknown protein, similar to TSK-associating protein 1 (TSA1) | 2.20 | 4.6E-06 | ||
| mirspot706 | HYPMIR749706 | 2.15 | 6.4E-06 | ||
| AT3G30775 | Osmotic stress-responsive Pro dehydrogenase (POX; PRO1) | 2.20 | 6.2E-06 | ||
| AT4G24190 | Shepherd; ortholog of GRP94, an endoplasmic reticulum–resident HSP90-like protein | 2.06 | 9.3E-06 | ||
| mirspot705 | HYPMIR749706 | 2.07 | 9.8E-06 | ||
| AT5G02500 | ATP binding, heat shock cognate 70-kD protein 1 | 1.98 | 8.9E-06 | ||
| Leaf | Down | AT5G18170 | GDH1 | 0.09 | 1.5E-07 |
a
Arabidopsis gene identification.
b
Average fold change (FC) between two replicated experiments.
c
Transcripts exhibiting a FDR lower than 0.0001%.