Table 2.
Annotation of NR2E orthologs by clade
| Human | C. elegans | Drosophila | Other species | |||||
|---|---|---|---|---|---|---|---|---|
|
Tlx |
nhr-67 |
tailless |
Nematostella NvR5 (2) |
|
|
|
|
|
| [NM 003269] |
[NM 069693] |
[NM 079857] |
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Apis AmTll (3) |
|||||
| |
|
|
Bombyx Tll (4) |
|
|
|
|
|
| |
|
|
Tribolium Tll (5) |
|
|
|
|
|
| |
|
|
Brugia BmNHR-15 (6) |
|||||
| |
|
|
Schmidtea Tlx (7) |
|
|
|
|
|
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Strongylocentrotus Tll (8) |
|
|
|
|
|
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Saccoglossus NP 001158362;Tll (9) |
|
|
|
|
|
|
PNR |
fax-1 |
unfulfilled/ |
Nematostella NvR6-NvR9 (2) |
|
|
|
|
|
| [NM 016346] |
[NM 076146] |
Hr51 |
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
[NM 137188] |
Apis AmHr51 (3) |
|
|
|
|
|
| |
|
|
Bombyx BmHr51 (4) |
|||||
| |
|
|
Tribolium Hr51 (5) |
|
|
|
|
|
| |
|
|
Brugia BmNHR-16 (6) |
|||||
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Strongylocentrotus Pnr (8) |
|||||
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Saccoglossus NP 001158447; PNR (9) |
|
|
|
|
|
| No ortholog |
nhr-239 |
Hr83 (1) |
Nematostella NvR6-NvR9 (2) |
|
|
|
|
|
| |
[NM 065178] |
[NM 141390] |
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Apis AmHr83 (3) |
|
|
|
|
|
| |
|
|
Bombyx ortholog not identified (4) |
|||||
| |
|
|
Tribolium Hr83 (5) |
|
|
|
|
|
| |
|
|
Brugia BmNHR-C* (6) |
|||||
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| |
|
|
Strongylocentrotus “Fax1” (8) |
|||||
| |
|
|
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|||||
| Saccoglossus XM 002740611; “NR6A1-like” (9) | ||||||||
(1) Annotated as Drosophila “Fax-1” in [32].
(2) Nematostella vectensis, four NR2E orthologs not clearly resolved, [38], this work.
(3) Apis mellifera[39].
(4) Bombyx mori[40].
(5) Tribolium castaneum[18,41].
(6) Brugia malayi[15].
(7) Schmidtea mediterranea[42].
(8) Strongylocentrotus purpuratus[43].
(9) Saccoglossus kowalevskii[44,45], this work.
* Incomplete gene assembly, tentative gene designation. The “Other species” column is organized by taxonomic groups: cnidarian, ecdysozoa, echinoderm, and hemichordate.