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. 2012 Nov 23;12:548. doi: 10.1186/1471-2407-12-548

Table 1.

Details of the CADMA assays

Mutation Cell line Primers (introduced mutations are underlined) Primer concentrations Annealing temperature
c.34 G > A
A549
Mutation specific forward:
400 nM
57°C
 
 
GAATATAAACTTATGGTAGTTGGAGATA
 
 
 
 
Overlapping forward:
100 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.34 G > T
NCI-H23
Mutation specific forward:
400 nM
60°C
 
 
GAATATAAACTTGTAGTAATTGGAGCTT
 
 
 
 
Overlapping forward:
150 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.34 G > C
PSN1
Mutation specific forward:
400 nM
60°C
 
 
GAATATAAACTTGTAGTAATTGGAGCTC
 
 
 
 
Overlapping forward:
100 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.35 G > A
LS174T
Mutation specific forward:
400 nM
60°C
 
 
GAATATAAACTTGTGGTAATTGGAGATGA
 
 
 
 
Overlapping forward:
150 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.35 G > T
SW480
Mutation specific forward:
400 nM
64°C
 
 
GAATATAAACTTGTAGTAATTGGAGCTGT
 
 
 
 
Overlapping forward:
150 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.35 G > C
RPMI8226
Mutation specific forward:
400 nM
58°C
 
 
GAATATAAACTTGTAGTAATTGGAGCTGC
 
 
 
 
Overlapping forward:
100 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
 
 
ACTGTCAAGGCACTCTTGCCTAC
 
 
c.38 G > A
DLD-1
Mutation specific forward:
400 nM
62°C
 
 
AAACTTGTGGTAGTTGGAGATGGTTA
 
 
 
 
Overlapping forward:
150 nM
 
 
 
ATGACTGAATATAAACTTGTGGTAGTTG
 
 
 
 
Common reverse:
400 nM
 
    ACTGTCAAGGCACTCTTGCCTAC    

Primer sequences are given in 5’ → 3’ directions.