Table 1.
List of primers used in this study.
Name | Nucleotide Sequence | Description |
---|---|---|
p1 | 5′ -ccGCATGCTACACCATTGTTAGTTGTATACAAGG | Forward primer of pbcrt 3′ coding sequence; SphI site underlined |
p2 | 5′ -ttGCGGCCGCTTATGCCCTTGATGTTTCTATAGAAG | Reverse primer of pbcrt 3′ coding sequence; NotI site underlined |
p3 | 5′-ccAAGCTTTTGATACAACATTTTTATTTCTTAAATGATTTTTG | Forward primer of pbcrt 3′UTR;HindIII site underlined |
p4 | 5′ -ccGCATGCCTCTCTATACATAGGCAAATAAGG | Reverse primer of pbcrt 3′UTR; SphI site underlined |
p5 | 5′-CATATGTGATAATTTACTTGCTTGC | Forward primer of pbcrt upstream coding sequence |
p6 | 5′-CTGGTGCTTTGAGGGGTGAGC | Reverse primer from hdhfr selectable marker cassette |
p7 | 5′-CAGGAAACAGCTATGAC | Reverse primer specific to the plasmid backbone |
p8 | 5′-GTTGGTTCGCTAAACTGCATC | Forward primer for hdhfr qPCR |
p9 | 5′-CTGTTTACCTTCTACTGAAGAGG | Reverse primer for hdhfr qPCR |
p10 | 5′-TGCAGCAGATAATCAAACTC | Forward primer for hsp70 qPCR |
p11 | 5′-ACTTCAATTTGTGGAACACC | Reverse primer for hsp70 qPCR |
p12 | 5′-CCTTATCTCATTATTAGATGCTTCTAC | Forward primer for pbcrt RT-PCR |
p13 | 5′-CCAATATTCTTGGTTTTCTTACAGC | Reverse primer for pbcrt RT-PCR |
p14 | 5′-TATGGGTCCAAGATATTGTAGTAATAA | Forward primer for Plasmodium berghei ama1 RT-PCR |
p15 | 5′-GAATTAGCTTTACCATAAATATCTGC | Reverse primer for P. berghei ama1 RT-PCR |
QT | 5′-CCAGTGAGCAGAGTGACGAGGACTCGAGCTCAAGC(T)17 | Primer to generate cDNA for 3′RACE |
QO | 5′-CCAGTGAGCAGAGTGACG | Outer primer for 3′RACE |
QI | 5′-GAGGACTCGAGCTCAAGC | Inner primer for 3′RACE |
SP6 | 5′-ATTTAGGTGACACTATAG | pGEM vector-specific primer to sequence 3′RACE products |
M13F | 5′-GTAAAACGACGGCCAGT | pGEM vector-specific primer to sequence 3′RACE products |
amal, apical membrane antigen 1; hdhfr human dihydrofolate reductase selectable marker; hsp70, heat shock protein 70; Pbcrt, Plasmodium berghei chloroquine resistance transporter; qPCR, quantitative PCR; RACE, random amplification of cDNA ends; RT-PCR, reverse transcription PCR; UTR, untranslated region.