Table 1. List of all verified Elavl3/4-dependent alternative exons.
37 Elavl3/4-dependent alternative exons were experimentally verified by RT-PCR. ΔI values obtained from splicing microarray analysis and RT-PCR experiments are presented. A positive ΔI value is associated with a higher fraction of exon-included isoform in WT compared to DKO samples.
| Gene Symbol | Transcript level change | Alt exon coordinates (mm9) | Alt Splicing Event | ΔI (Microrray) | ΔI (RT-PCR) |
|---|---|---|---|---|---|
| Clip1 | 1.01 | chr5:124077303-124077419 | cassette/complex | -0.3 | -0.44 |
| Camta1 | 1.14 | chr4:151166528-151166611 | intron retention | -0.38 | -0.39 |
| Grip1 | 0.98 | chr10:119422530-119422685 | cassette | -0.27 | -0.35 |
| Gls | 1.21 | chr1:52244638-52244697 | alt 3’exon | -0.03 | -0.3 |
| Ogt | 0.92 | chrX:98838315-98838345 | alt 3’ss | -0.23 | -0.3 |
| Mapk9 | 1.08 | chr11:49687766-49687837 | mut ex | -0.14 | -0.27 |
| Robo2 | 0.95 | chr16:74009020-74009031 | cassette | -0.22 | -0.23 |
| 2410002 O22Rik | 0.91 | chr13:104942245-104942262 | cassette | -0.28 | -0.22 |
| Uevld | 1.35 | chr7:54190253-54190410 | cassette | -0.16 | -0.2 |
| Rapgef6 | 1.03 | chr11:54507772-54508074 | cassette | -0.12 | -0.19 |
| Sult4a1 | 1.12 | chr15:83909199-83909327 | cassette | -0.2 | -0.18 |
| Lrch3 | 0.99 | chr16:32995892-32995999 | cassette | -0.22 | -0.18 |
| Q8BLQ9-2 | 0.96 | chr16:66731630-66731749 | cassette | -0.29 | -0.18 |
| Dst | 1.11 | chr1:34306649-34306975 | cassette | -0.15 | -0.18 |
| Vps29 | 1.04 | chr5:122806803-122806814 | cassette | -0.19 | -0.17 |
| Epb4.1 | 0.92 | chr4:131518839-131518901 | cassette/complex | -0.13 | -0.17 |
| Dhdds | 0.95 | chr4:133556254-133556308 | alt 3’ ss | -0.17 | -0.15 |
| Abi1 | 1.06 | chr2:22809128-22809131 | alt 3’ss | -0.09 | -0.13 |
| Macf1 | 1.05 | chr4:123074337-123074663 | cassette | -0.13 | -0.11 |
| Ank3 | 0.97 | chr10:69416188-69416220 | cassette | -0.07 | -0.11 |
| Rod1 | 1.02 | chr4:59559021-59559054 | cassette | -0.09 | -0.08 |
| Cadm3 | 1.13 | chr1:175279153-175279254 | cassette | -0.07 | -0.06 |
| Mdm2 | 0.96 | chr10:117146774-117146840 | cassette | -0.1 | -0.06 |
| 2210010B 09Rik | 1.05 | chr9:20393901-20394002 | cassette | 0.1 | 0.05 |
| Cugbp2 | 0.97 | chr2:6528928-6529007 | cassette | 0.08 | 0.06 |
| Thyn1 | 0.93 | chr9:26814386-26814536 | cassette | 0.14 | 0.06 |
| Cldnd1 | 1.1 | chr16:58729293-58729336 | cassette | 0.09 | 0.07 |
| Nrxn1 | 1.06 | chr17:91101328-91101351 | cassette | 0.06 | 0.09 |
| Cltb | 1.02 | chr13:54698387-54698440 | cassette | 0.08 | 0.09 |
| Ank2 | 1.04 | chr3:126666301-126666399 | cassette | 0.09 | 0.11 |
| Elavl2 | 0.86 | chr4:90920832-90920870 | cassette | 0.06 | 0.12 |
| Ap1gbp1 | 0.97 | chr11:83853158-83853193 | cassette | 0.07 | 0.13 |
| Kif2a | 1.06 | chr13:107759784-107759897 | cassette | 0.16 | 0.2 |
| Snap25 | 1.07 | chr2:136595479-136595596 | mut ex | 0.14 | 0.21 |
| Mapk9 | 1.08 | chr11:49687338-49687409 | mut ex | 0.13 | 0.27 |
| Plekha5 | 0.84 | chr6:140528868-140529056 | cassette | 0.25 | 0.28 |
| Rufy2 | 1.29 | chr10:62465694-62467405 | alt 3’exon | 0.32 | 0.37 |
Abbreviations: mut ex: mutually exclusive; alt 3’ exon: alternative 3’ exon; alt 3’ss: alternative 3’ splice site. See also Table S7.