Table 2. EMT-core list of 130 genes shared between at least 10 GES datasets.

	Upregulated	Downregulated
Cell adhesion and migration	ADAM12, CDH11, CDH2, COL1A1, COL3A1, COL5A1, COL6A1, COL6A3, CTGF, CYP1B1, DLC1, FBLN1, FBLN5, FGF2, FGFR1, FN1, HAS2, LUM, MMP2, MYL9, NID2, NR2F1, NRP1, PLAT, PPAP2B, PRKCA, RECK, SERPINE1, SERPINE2, SPOCK1, TGM2, TNFAIP6, TPM1, VCAN, WNT5A	CD24, CDH1, CXADR, CXCL16, DSG3, ELF3, EPCAM, EPHA, JUP, MPZL2, OVOL2, PLXNB1, S100P, SLC7A5, SYK
Development, cell differentiation and proliferation	CDKN2C, EMP3, FBN1, IGFBP3, IL1R1, LTBP1, MME, PMP22, PTGER2, PTX3, SRGN, SULF1, SYNE1, TAGLN, TUBA1A, VIM, ZEB1	ABLIM1, ADRB2, ALDH1A3, ANK3, BIK CA2, CTSL2, FGFR2, FGFR3, FST, GJB3, IFI30, IL18, KLK7, KRT15, KRT17, LSR, MAP7, MBP, OCLN, PKP2, PPL, PRSS8, RAPGEF5, SPINT1
Angiogenesis and wound healing	DCN, LOX, TFPI	no gene with a major classification *
Metabolism	ABCA1, GALNT10, SLC22A4	GPX3, SLC27A2, SMPDL3B, SORL1, ST6GALNAC2
Others or unclassified	C5orf13, CDK14, EML1, FSTL1, LTBP2, MAP1B, RGS4, SYT11, TMEM158	AGR2, C10orf10, CDS1, FAM169A, FXYD3, KLK10, LAD1, MTUS1, PLS1, PRRG4, RHOD, SERPINB1, SLPI, TMEM30B, TPD52L1, TSPAN1, ZHX2, ZNF165

Categories have been chosen according to the GO classifications of the enrichment tools. Genes may be present in more than one category.

^*see Table S3 for more information.