Table 4.
Identified targets of the novel miRNAs in wild soybean
|
miR_name |
Target |
Alignment score |
Cleavage site |
Al-treated |
Al-free |
|
||||
|---|---|---|---|---|---|---|---|---|---|---|
| Categorya | Percentage of cleavage at the expected site | Reads at cleavage site (tpb)b | Category | Percentage of cleavage at the expected site | Reads at cleavage site (tpb) | Target gene family | ||||
| PC-46-5p |
Glyma03g33240 |
1 |
2649 |
2 |
0.50% |
96.53 |
|
|
|
Cation transporting ATPase |
| |
Glyma05g23260 |
1.5 |
3244 |
|
|
|
2 |
0.68% |
121.15 |
Protein tyrosine kinase |
| |
Glyma13g03270 |
3.5 |
1559 |
2 |
1.33% |
38.61 |
2 |
2.01% |
60.57 |
TPR repeat-containing protein |
| |
Glyma14g23650 |
3.5 |
961 |
2 |
1.06% |
38.61 |
2 |
1.47% |
60.57 |
TPR repeat-containing protein |
| |
Glyma19g35960 |
1 |
2649 |
2 |
0.51% |
96.53 |
|
|
|
Cation transporting ATPase |
| gso-mir167a-p3 |
Glyma13g04540 |
3.5 |
1822 |
3 |
0.07% |
58.99 |
|
|
|
Lipase (class3) |
| PN-mir156f-p3 |
Glyma03g27590 |
3 |
333 |
2 |
0.17% |
96.53 |
2 |
0.17% |
121.15 |
Transcription elongation factor SPT6 |
| Glyma19g30560 | 3 | 206 | 2 | 0.14% | 96.53 | 2 | 0.25% | 121.15 | Transcription elongation factor SPT6 | |
a, The numbers represent the four category as follows: 0 indicates category I; 1 indicates category II; 2 indicates category III; 3 indicates category IV.
b, tpb, transcripts per billion.