Table 5.

Evaluation of homology modeling templates

Evaluation method	Criteria	Points
Sequence identity for BLAST, RPS-BLAST and HHSearch	20% to 40%	1
	40% to 60%	2
	60% to 80%	3
	80% to 90%	4
	90% to100%	5
HHsearch probability	80% to 85%	1
	85% to 90%	2
	90% to 99%	3
	99% to 99.99%	4
	99.99% to 100%	5
BLAST and RPS-BLAST e-value	1e-6 to 1e-2	1
	1e-6 to 1e-18	2
	1e-18 to 1e-54	3
	< 1e-54	4
Consensus bonus	Predicted by two methods	1
	Predicted by three methods	2