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. 2012 Dec 12;7(12):e51159. doi: 10.1371/journal.pone.0051159

Table 1. Sequences used in the phylogenetic reconstruction.

Taxon GenBank or Uniprot ID
Acidimicrobium ferrooxidans 256007505
Acidobacterium capsulatum 225874618
Algoriphagus sp. 311746515
Arabidopsis thaliana g1 15232442
Arabidopsis thaliana g2 30697740
Arabidopsis thaliana g3 240254631
Arabidopsis thaliana g4 15219272
Arabidopsis thaliana g5 222423984
Archaeoglobus fulgidus 11499081
Aureococcus anophagefferens 323453325
Babesia bovis 156084500
Capsaspora owczarzaki 320168251
Chlamydomonas reinhardtii 51701320
Chlorobaculum parvum 193085694
Chloroflexus sp. 222450523
Cryptosporidium hominis 67594757
Cryptosporidium muris 209881885
Cryptosporidium parvum 66357588
Deinococcus deserti 226355772
Dictyoglomus thermophilum 206740030
Dictyostelium discoideum 66806573
Dictyostelium fasciculatum 328865638
Dictyostelium purpureum 330798819
Ectocarpus siliculosus 299117425
Emiliania huxleyi 223670909
Escherichia coli 15804552
Gemmatimonas aurantiaca 226229154
Haemophilus influenzae 16273525
Halobacterium sp. 15791074
Lentisphaera araneosa 149200328
Leptospira biflexa 167780286
Methanosarcina acetivorans 229017561
Methanothermobacter thermautotrophicus 15678963
Mycoplasma penetrans 26554388
Myxococcus xanthus 108759396
Nitrosomonas europaea 30248603
Oryza sativa g1 222622510
Oryza sativa g10 115476100
Oryza sativa g11 15022444
Oryza sativa g2 51091643
Oryza sativa g3 222617602
Oryza sativa g4 115440043
Oryza sativa g5 115434082
Oryza sativa g6 115435200
Oryza sativa g7 50251800
Oryza sativa g8 9828445
Oryza sativa g9 222619275
Phaeodactylum tricornutum g1 219120583
Phaeodactylum tricornutum g2 327343197
Physcomitrella patens g1 168044057
Physcomitrella patens g2 168010333
Physcomitrella patens g3 168027443
Physcomitrella patens g4 168042979
Physcomitrella patens g5 168016115
Physcomitrella patens g6 168061648
Picrophilus torridus 48478036
Pirellula staleyi 283779027
Plasmodium berghei 68071185
Plasmodium chabaudi 70950271
Plasmodium falciparum 124808830
Plasmodium knowlesi 221060224
Plasmodium vivax 156102026
Plasmodium yoelii 83282693
Polysphondylium pallidum 281207688
Pseudomonas aeruginosa 347303632
Pyrobaculum aerophilum 18314050
Pyrococcus furiosus 18978347
Rhodospirillum centenum 209965727
Selaginella moellendorffii g1 302800171
Selaginella moellendorffii g2 302783266
Selaginella moellendorffii g3 302817036
Selaginella moellendorffii g4 302795803
Streptobacillus moniliformis 269123480
Streptococcus thermophilus 89143166
Sulfolobus solfataricus 15899028
Synechococcus sp. 87284805
Thalassiosira pseudonana g1 224000774
Thalassiosira pseudonana g2 223998678
Verrucomicrobium spinosum 171911854
Vibrio cholerae 227082762
Volvox carteri g1 302835908
Volvox carteri g2 302830816
Halobacterium salinarum CAPPA HALSA (Q9HN43)
Archaeoglobus fulgidus CAPPA ARCFU (O28786)
Archaeoglobus veneficus F2KS60 ARCVE (F2KS60)
Caldivirga maquilingensis CAPPA CALMQ (A8MBK0)
Candidatus Caldiarchaeum E6N9G7 9ARCH (E6N9G7)
Candidatus Kuenenia Q1PXR4 9BACT (Q1PXR4)
Candidatus Methylomirabilis D5MHI6 9BACT (D5MHI6)
Clostridium cellulovorans D9SUK0 CLOC7 (D9SUK0)
Clostridium perfringens g1 B1RBJ1 CLOPE (B1RBJ1)
Clostridium perfringens g2 B1BWT1 CLOPE (B1BWT1)
Clostridium perfringens g3 CAPPA CLOPE (Q8XLE8)
Clostridium perfringens g4 CAPPA CLOPS (Q0STS8)
Clostridium perfringens g5 B1RT70 CLOPE (B1RT70)
Clostridium perfringens g6 B1RJT6 CLOPE (B1RJT6)
Clostridium perfringens g7 CAPPA CLOP1 (Q0TRE4)
Clostridium perfringens g8 B1BFT5 CLOPE (B1BFT5)
Clostridium perfringens g9 B1V5L0 CLOPE (B1V5L0)
Desulfonatronospira thiodismutans D6SP11 9DELT (D6SP11)
Desulforudis audaxviator B1I2W1 DESAP (B1I2W1)
Dictyoglomus thermophilum B5YCF7 DICT6 (B5YCF7)
Ferroglobus placidus D3S0D1 FERPA (D3S0D1)
Halobacterium salinarum CAPPA HALS3 (B0R7F9)
Ignicoccus hospitalis A8A9C2 IGNH4 (A8A9C2)
Ignisphaera aggregans E0SSB1 IGNAA (E0SSB1)
Lactobacillus brevis C2D3X1 LACBR (C2D3X1)
Lactobacillus buchneri C0WSM6 LACBU (C0WSM6)
Lactobacillus hilgardii C0XL21 LACHI (C0XL21)
Leptospirillum ferrodiazotrophum. C6HVN3 9BACT (C6HVN3)
Leptospirillum rubarum. A3EQI3 9BACT (A3EQI3)
Leptospirillum sp. B6AN75 9BACT (B6AN75)
Leuconostoc citreum B1N089 LEUCK (B1N089)
Leuconostoc gasicomitatum D8ME72 LEUGT (D8ME72)
Leuconostoc kimchii D5T4D7 LEUKI (D5T4D7)
Leuconostoc mesenteroides C2KKA6 LEUMC (C2KKA6)
Leuconostoc mesenteroides CAPPA LEUMM (Q03VI7)
Metallosphaera sedula CAPPA METS5 (A4YES9)
Methanohalobium evestigatum D7E7Q5 METEZ (D7E7Q5)
Methanoplanus petrolearius E1RII9 METP4 (E1RII9)
Methanopyrus kandleri CAPPA METKA (Q8TYV1)
Methanosarcina acetivorans CAPPA METAC (Q8TMG9)
Methanosarcina barkeri CAPPA METBF (Q469A3)
Methanosarcina mazei CAPPA METMA (Q8PS70)
Methanospirillum hungatei CAPPA METHJ (Q2FLH1)
Methanothermobacter marburgensis D9PXG9 METTM (D9PXG9)
Methanothermobacter thermautotrophicus CAPPA METTH (O27026)
Methanothermus fervidus E3GXT0 METFV (E3GXT0)
Oenococcus oeni g1 A0NKU8 OENOE (A0NKU8)
Oenococcus oeni g2 D3LBW5 OENOE (D3LBW5)
Oenococcus oeni g3 CAPPA OENOB (Q04D35)
Picrophilus torridus CAPPA PICTO (Q6L0F3)
Pyrobaculum aerophilum CAPPA PYRAE (Q8ZT64)
Pyrobaculum arsenaticum CAPPA PYRAR (A4WJM7)
Pyrobaculum calidifontis CAPPA PYRCJ (A3MVZ5)
Pyrobaculum islandicum CAPPA PYRIL (A1RR50)
Pyrococcus abyssi CAPPA PYRAB (Q9V2Q9)
Pyrococcus furiosus CAPPA PYRFU (Q8TZL5)
Pyrococcus horikoshii CAPPA PYRHO (O57764)
Sulfolobus acidocaldarius CAPPA SULAC (Q4JCJ1)
Sulfolobus islandicus g1 CAPPA SULIA (C3N0D7)
Sulfolobus islandicus g2 CAPPA SULIY (C3N8C3)
Sulfolobus islandicus g3 CAPPA SULIL (C3MJE5)
Sulfolobus islandicus g4 F0NMR2 SULIH (F0NMR2)
Sulfolobus islandicus g5 CAPPA SULIN (C3NJA0)
Sulfolobus islandicus g6 CAPPA SULIM (C3MTS7)
Sulfolobus islandicus g7 D2PDY7 SULID (D2PDY7)
Sulfolobus islandicus g8 CAPPA SULIK (C4KJI5)
Sulfolobus islandicus g9 F0NG17 SULIR (F0NG17)
Sulfolobus solfataricus g1 CAPPA SULSO (Q97WG4)
Sulfolobus solfataricus g2 D0KUQ4 SULS9 (D0KUQ4)
Sulfolobus tokodaii CAPPA SULTO (Q96YS2)
Thermococcus barophilus F0LK16 THEBM (F0LK16)
Thermococcus sibiricus C6A2T7 THESM (C6A2T7)
Thermofilum pendens CAPPA THEPD (A1RZN3)
Thermoproteus neutrophilus B1YBY2 THENV (B1YBY2)
Thermoproteus uzoniensis g1 F2L305 THEU7 (F2L305)
Thermoproteus uzoniensis g2 F2L5Y2 9CREN (F2L5Y2)
Vulcanisaeta distributa E1QNA4 VULDI (E1QNA4)
Acidobacterium capsulatum C1F4Y2 ACIC5 (C1F4Y2)
Cellulomonas flavigena D5UGP1 CELFN (D5UGP1)
Chitinophaga pinensis C7PRS5 CHIPD (C7PRS5)
Dokdonia donghaensis A2TNK9 9FLAO (A2TNK9)
Erythrobacter sp. g1 A5P918 9SPHN (A5P918)
Erythrobacter sp. g2 A3WAI8 9SPHN (A3WAI8)
Flavobacteria bacterium A3J3B3 9FLAO (A3J3B3)
Flavobacteriales bacterium A8UJQ6 9FLAO (A8UJQ6)
Flavobacterium johnsoniae A5FG47 FLAJ1 (A5FG47)
Geobacter sp. B9M086 GEOSF (B9M086)
Gramella forsetii A0M1G5 GRAFK (A0M1G5)
Haladaptatus paucihalophilus E7QR15 9EURY (E7QR15)
Halalkalicoccus jeotgali D8JA44 HALJB (D8JA44)
Haloarcula marismortui Q5V4H5 HALMA (Q5V4H5)
Haloferax volcanii D4GUG0 HALVD (D4GUG0)
Halogeometricum borinquense E4NPR5 HALBP (E4NPR5)
Halomicrobium mukohataei C7NYU1 HALMD (C7NYU1)
Haloquadratum walsbyi Q18FG1 HALWD (Q18FG1)
Halorhabdus utahensis C7NNW9 HALUD (C7NNW9)
Halorubrum lacusprofundi B9LS13 HALLT (B9LS13)
Haloterrigena turkmenica g1 D2RVU2 HALTV (D2RVU2)
Haloterrigena turkmenica g2 D2S2A1 HALTV (D2S2A1)
Haloterrigena turkmenica g3 D2S1E1 HALTV (D2S1E1)
Kordia algicida A9E081 9FLAO (A9E081)
Kribbella flavida D2PKN1 KRIFD (D2PKN1)
Leeuwenhoekiella blandensis A3XNY5 LEEBM (A3XNY5)
Microbacterium sp. B1NEZ1 9MICO (B1NEZ1)
Natrialba magadii D3SY20 NATMM (D3SY20)
Physcomitrella patens A9SLH0 PHYPA (A9SLH0)
Polaribacter irgensii A4BW74 9FLAO (A4BW74)
Polaribacter sp. A2TXN6 9FLAO (A2TXN6)
Populus trichocarpa B9PBR9 POPTR (B9PBR9)
Ricinus communis B9T8D2 RICCO (B9T8D2)
Riemerella anatipestifer g1 E4T920 RIEAD (E4T920)
Riemerella anatipestifer g2 F0TPC5 RIEAR (F0TPC5)
Riemerella anatipestifer g3 E6JHS7 RIEAN (E6JHS7)
Tetrahymena thermophila Q23YQ3 TETTH (Q23YQ3)
uncultured haloarchaeon g1 A5YSL4 9EURY (A5YSL4)
uncultured haloarchaeon g2 A7U0W6 9EURY (A7U0W6)
Zunongwangia profunda D5BFE2 ZUNPS (D5BFE2)