Skip to main content
. 2012 Nov 26;2012:pls030. doi: 10.1093/aobpla/pls030

Table 5.

Characteristics of polymorphic microsatellite loci isolated from M. acuminata Calcutta 4 and Cavendish Grande Naine EST data.

Locus name SSR repeat motif SSR locus length (bp) Obtained allele size range (bp) Allele number He Ho PIC value
MA41 AG 27 350–390 8 0.83 0.63 0.81
MA45 TCTT 16 110–120 3 0.6 0.88 0.53
MA47 CTC 16 140–160 2 0.48 0.81 0.37
MA412 GAA 25 350–360 3 0.67 0.57 0.59
MA413 CTC 16 240–250 3 0.55 0.42 0.48
MA418 GAG 13 320–330 4 0.7 0.61 0.64
MA425 AG 21 220–250 7 0.79 0.79 0.76
MA426 TAAT 14 150–160 3 0.27 0.22 0.25
MA428 AAG 36 200–220 4 0.64 0.33 0.57
MA432 CAC 13 300–320 5 0.67 0.76 0.61
MA435 GAA 19 330–350 4 0.71 0.83 0.66
MA440 TTC 19 170–175 2 0.19 0.13 0.17
MA441 CT 13 100–110 5 0.63 0.52 0.58
MA443 TTC 18 310–340 5 0.71 0.58 0.67
MA444 CT 33 260–280 3 0.29 0.35 0.26
MA446 TC 14 140–150 3 0.61 0.27 0.53
MA452 AGA 21 170–180 5 0.7 0.73 0.66
MA453 CGC 12 330–335 2 0.50 0.21 0.37
MA455 GAA 20 240–250 3 0.54 0.23 0.45
MA466 CAG 16 170–180 4 0.75 0.67 0.7
MA472 GAGAG 15 300 4 0.60 0.35 0.54
MA476 AC 13 200–210 4 0.72 0.58 0.67
MA479 CCT 13 340–350 4 0.3 0.38 0.26
MA489 AT 14 260–300 3 0.44 0.23 0.37
MA490 CAC 16 190–200 3 0.57 0.47 0.49
MA492 AT 23 175–180 5 0.69 0.75 0.65
MA493 CTC 12 310–320 2 0.5 0.5 0.37
MA495 GAA 16 180–220 2 0.42 0.00 0.33
MA4100 AG 14 320–335 3 0.38 0.48 0.33
MA4104 GA 47 300–320 4 0.61 0.38 0.55
MA4110 TCT 30 280–300 6 0.74 0.25 0.70
MA4111 AGC 26 375–290 4 0.73 0.52 0.68
MA4116 CT 23 380–410 5 0.72 0.65 0.68
MA4128 CTT 25 210–220 3 0.47 0.47 0.38
MACV11 CAG 20 210–220 4 0.5 0.5 0.46
MACV15 GA 22 270–290 6 0.81 0.33 0.79
MACV20 TC 12 340–360 5 0.72 0.83 0.66
MACV21 TCA 36 340–360 4 0.47 0.57 0.43
MACV27 TC 36 290–310 5 0.73 0.63 0.68
MACV29 TAAT 14 140–150 2 0.39 0.13 0.32
MACV36 CT 33 240–270 5 0.78 0.77 0.74
MACV37 AGC 21 100–110 3 0.1 0.1 0.09
MACV42 AGA 24 320–330 3 0.56 0.25 0.48
MACV47 GA 32 320–320 3 0.64 0.61 0.56
MACV49 AGGCGA 21 270–275 2 0.39 0.33 0.31
MACV50 TC 13 130–140 3 0.1 0.1 0.09
MACV51 CT 19 180–200 4 0.4 0.48 0.37
MACV54 CAG 12 160–180 4 0.68 0.7 0.62
MACV55 AGA 18 170–190 6 0.73 0.83 0.69
MACV62 TTTTTA 28 250–280 3 0.53 0.1 0.43
MACV63 TGC 25 120–140 6 0.72 0.67 0.67
MACV73 CTCTC 16 220–225 2 0.41 0.42 0.33
MACV77 GCC 12 90–115 4 0.58 0.54 0.52
MACV81 GAA 15 200–205 2 0.28 0.05 0.24
MACV87 TCC 15 110–130 4 0.69 0.83 0.64
MACV88 GAA 27 250–300 5 0.76 0.71 0.72
MACV96 TCT 15 180–210 5 0.75 0.57 0.70
MACV99 GA 13 240–260 2 0.08 0.08 0.08
MACV104 AG 14 290–330 7 0.81 0.65 0.79
MACV109 GGA 23 385–390 2 0.08 0.00 0.08
MACV111 CTACA 16 130–150 2 0.63 0.55 0.60
MACV112 CTC 12 330–360 3 0.78 0.74 0.74
MACV115 AAG 12 150–165 6 0.59 0.55 0.51
MACV128 ATGCTC 20 420–450 4 0.43 0.27 0.39
MACV132 CTC 31 280–290 4 0.58 0.65 0.53
MACV134 CCT 13 320–335 3 0.51 0.78 0.42
MACV139 GA 17 90–120 7 0.75 0.95 0.71
MACV148 CTC 19 150–170 5 0.69 0.57 0.63
MACV151 TTC 21 270–290 5 0.75 0.87 0.71
MACV154 AAG 12 130–150 3 0.12 0.13 0.12
MACV155 TC 21 330–350 3 0.63 0.26 0.56
MACV157 GGA 13 140–155 2 0.29 0.35 0.25
MACV161 GCA 12 110–120 3 0.61 0.42 0.53
MACV162 ATCTG 15 190–200 2 0.15 0.17 0.14
MACV169 TC 37 150–170 6 0.79 0.75 0.76

Polymorphism was evaluated across 20 M. acuminata accessions.

HE, expected heterozygosity under Hardy–Weinberg expectations; HO, observed heterozygosity; PIC, polymorphism information content.