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. 2012 Dec 7;13(Suppl 17):S17. doi: 10.1186/1471-2105-13-S17-S17

Table 1.

Comparing average number of pathways crossed from the top 20 routes in two methods.

Source Target switchmrsd switchneato switchmetaroute switchcmpf1 switchcmpf2
glucose pyruvate 1.95 1.5 2.95 0 0.85
glutamate proline 2.45 2.79 0.47 0 0.3
oxaloacetate malate 1.75 1.33 0.65 0 0.95
glutamate arginine 2.45 2.05 0.4 0 0
cdp-diacyl-glycerol cardiolipin 1.75 1.0 1.8 0 0.1
gtp riboflavin 2 1.78 4.25 0.95 1.05
allantoin glyoxylate 4.3 2.0 * 1.85 3.15
rhamnose pyruvate 1.9 0.875 1.1 0.85 1

CMPF1 uses static penalty and CMPF2 uses dynamic penalty. (*denotes no path found by method)