Table 1. Lead peptides for the molecular evolution process identified from a panel of alleged GM1-binding peptides.
No. | Lead sequences L | Fitness | Lead sequences D | Fitness |
1 | LPRHRDTGILDSIGRF | 34,68 | apqrlqwfagplrrfd | 157,50 |
2 | DFRRLPGAFWQLRQPA | 31,36 | tnhyekifsyteslag | 102,36 |
3 | PQIAMFCGRLNMNMNV | 27,93 | drhrplfghrahdmts | 90,77 |
4 | GALSETYSFIKEYHNT | 26,06 | plfghrahdmtsatal | 87,02 |
5 | YEVNWKTHEIKVKGQN | 25,81 | gtdrhrplfghrahdm | 82,55 |
6 | AEPQIAMFCGRLNMHM | 25,12 | ligtdrhrplfghrah | 77,87 |
7 | HHCSILKEVWHVKKLG | 24,71 | fikdnlthiqtnhyea | 75,51 |
8 | GWWYKGRARPVSAVAA | 24,04 | hrplfghrahdmtsat | 64,35 |
9 | AKVEKLCVWNNKTPHA | 22,65 | frgisdligtdrhrpl | 59,27 |
10 | ASDWYDEMLTWNIHGA | 22,32 | mhmnlrgcfmaiqpea | 53,31 |
11 | VWRLLAPPFSNRLLPA | 21,46 | apllrnsfppallrwv | 52,06 |
12 | vnmhmnlrgcfmaiqp | 51,71 | ||
13 | lrgcfmaiqpeallga | 50,05 |
Fitness values correspond to fluorescence intensities obtained in a solid-phase binding assay with lysoGM1/DY650-conjugate (arbitrary units) and reflect the probe-binding strength of each peptide. Highlighted amino acids were identified in “alanine walk” experiments as beneficial (boldface) or detrimental (underlined) for binding.