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. 2012 Nov;192(3):1027–1047. doi: 10.1534/genetics.112.143164

Table 3. Accuracy of different methods for choosing summary statistics on a local scale.

Method ε Parameter RARMISE RAE mode RAE mean RAE median KS500 Cov. P
pls.loc 0.001 μθanc 0.168 (0.136) 0.081 (0.091) 0.088 (0.095) 0.086 (0.091) 0.043 0.314
σθanc 0.490 (0.262) 0.283 (0.229) 0.277 (0.234) 0.271 (0.226) 0.043 0.314
ω 0.450 (0.278) 0.232 (0.234) 0.225 (0.228) 0.225 (0.228) 0.031 0.723
0.01 μθanc 0.175 (0.126) 0.088 (0.094) 0.098 (0.103) 0.094 (0.099) 0.067 0.023*
σθanc 0.485 (0.274) 0.287 (0.222) 0.287 (0.243) 0.280 (0.223) 0.046 0.232
ω 0.434 (0.259) 0.240 (0.238) 0.235 (0.224) 0.236 (0.227) 0.033 0.655
0.1 μθanc 0.220 (0.147) 0.101 (0.103) 0.113 (0.108) 0.106 (0.104) 0.087 0.001*
σθanc 0.489 (0.282) 0.294 (0.216) 0.275 (0.243) 0.288 (0.231) 0.057 0.078
ω 0.429 (0.259) 0.239 (0.226) 0.239 (0.227) 0.234 (0.223) 0.045 0.273
lgb.loc 0.001 μθanc 0.149 (0.151) 0.061 (0.074) 0.067 (0.081) 0.064 (0.077) 0.076 0.006*
σθanc 0.440 (0.213) 0.271 (0.213) 0.259 (0.209) 0.253 (0.209) 0.037 0.500
ω 0.450 (0.283) 0.229 (0.231) 0.223 (0.219) 0.223 (0.217) 0.029 0.794
0.01 μθanc 0.144 (0.147) 0.065 (0.074) 0.068 (0.078) 0.066 (0.077) 0.085 0.001*
σθanc 0.456 (0.237) 0.292 (0.209) 0.277 (0.223) 0.268 (0.213) 0.035 0.576
ω 0.439 (0.27) 0.235 (0.229) 0.228 (0.225) 0.230 (0.225) 0.027 0.862
0.1 μθanc 0.140 (0.133) 0.068 (0.077) 0.069 (0.078) 0.068 (0.078) 0.093 <0.001*
σθanc 0.467 (0.275) 0.315 (0.233) 0.298 (0.24) 0.288 (0.234) 0.020 0.991
ω 0.431 (0.264) 0.232 (0.22) 0.226 (0.219) 0.227 (0.222) 0.039 0.423
l1b.loc 0.001 μθanc 0.184 (0.183) 0.070 (0.081) 0.070 (0.083) 0.071 (0.082) 0.059 0.062
σθanc 0.449 (0.215) 0.263 (0.234) 0.254 (0.219) 0.256 (0.218) 0.034 0.610
ω 0.484 (0.281) 0.246 (0.253) 0.232 (0.218) 0.240 (0.233) 0.034 0.610
0.01 μθanc 0.176 (0.18) 0.072 (0.081) 0.070 (0.083) 0.070 (0.082) 0.071 0.012*
σθanc 0.450 (0.218) 0.268 (0.25) 0.263 (0.23) 0.257 (0.221) 0.033 0.651
ω 0.466 (0.279) 0.255 (0.265) 0.234 (0.22) 0.241 (0.234) 0.029 0.791
0.1 μθanc 0.175 (0.181) 0.076 (0.092) 0.072 (0.084) 0.071 (0.085) 0.107 <0.001*
σθanc 0.504 (0.276) 0.277 (0.234) 0.291 (0.251) 0.261 (0.227) 0.045 0.257
ω 0.444 (0.267) 0.238 (0.236) 0.237 (0.227) 0.231 (0.225) 0.032 0.694
l2b.loc 0.001 μθanc 0.180 (0.18) 0.071 (0.08) 0.074 (0.084) 0.070 (0.081) 0.043 0.314
σθanc 0.436 (0.207) 0.249 (0.222) 0.251 (0.215) 0.253 (0.213) 0.030 0.759
ω 0.479 (0.275) 0.257 (0.261) 0.233 (0.226) 0.244 (0.235) 0.037 0.500
0.01 μθanc 0.172 (0.173) 0.075 (0.085) 0.077 (0.087) 0.076 (0.087) 0.056 0.084
σθanc 0.444 (0.211) 0.258 (0.246) 0.264 (0.225) 0.257 (0.215) 0.033 0.651
ω 0.459 (0.276) 0.256 (0.276) 0.234 (0.228) 0.244 (0.236) 0.036 0.532
0.1 μθanc 0.168 (0.169) 0.077 (0.091) 0.076 (0.09) 0.077 (0.091) 0.128 <0.001*
σθanc 0.496 (0.266) 0.277 (0.235) 0.289 (0.241) 0.264 (0.23) 0.044 0.284
ω 0.446 (0.271) 0.239 (0.242) 0.237 (0.23) 0.236 (0.233) 0.035 0.579

Details are as in Table 2 (cf. Figure S9).