Table 2. Standard intra-population genetic diversity indices at neutral and ELA loci.
| Population | Locus | N | A | A CORR | H E | S | Indels (bp) | k | H D (SD) | π (SD) |
| Etosha | μsats (n = 13)1 | 84 | 8.92 (±0.87) | 7.99 | 0.767 (±0.038) | — | — | — | — | — |
| β-Fibr intron2 | 36 | 8 | 7.75 | 0.725 | 6 | 14 | 0.961 | 0.682 (0.037) | 0.0015 (0.0002) | |
| DRA | 72 | 8 | 7.84 | 0.743 | 9 | 0 | 2.158 | 0.748 (0.028) | 0.0088 (0.0005) | |
| DQA | 33 | 15 | 13.97 | 0.869 | 80 | 1 | 19.622 | 0.883 (0.026) | 0.0962 (0.0073) | |
| DQA ALL | 36 | 16 | 15.71 | 0.873 | 80 | 1 | 18.687 | 0.885 (0.025) | 0.0916 (0.0073) | |
| Kruger | μsats (n = 13)1 | 38 | 7.08 (±0.65) | 7.01 | 0.749 (±0.033) | — | — | — | — | — |
| β-Fibr intron2 | 24 | 6 | 6 | 0.517 | 4 | 14 | 0.553 | 0.490 (0.082) | 0.0009 (0.0002) | |
| DRA | 31 | 8 | 8 | 0.860 | 7 | 0 | 2.393 | 0.874 (0.013) | 0.0097 (0.0005) | |
| DQA | 23 | 13 | 13 | 0.865 | 78 | 0 | 14.739 | 0.884 (0.030) | 0.0719 (0.0124) | |
| DQA ALL | 30 | 15 | 15 | 0.891 | 81 | 0 | 17.165 | 0.897 (0.021) | 0.0837 (0.0101) |
Genetic diversity estimates are reported for microsatellites (μsats), the β-Fibr intron, and ELA loci (DRA, DQA). Indices include allelic richness (A), rarefaction-corrected allelic richness (A CORR), expected heterozygosity (H E), number of segregating sites (S), insertion/deletion mutations (indels) in base pairs (bp), average pair-wise difference between sequences (k), haplotype diversity (H D), and nucleotide diversity (π). The number of individuals (N) used in calculating diversity estimates are reported. Standard deviation (SD) or standard error (± SE) for estimates shown in parentheses. Diversity estimates for the DQA locus are reported both excluding (DQA) and including (DQAALL) individuals with multi-locus genotypes.
Mean (± SE) estimates reported, averaged over 13 loci.
A and HE incorporate indel mutations in allele identification.