Table 3. Unbiased intra-population genetic diversity indices independent of allele frequency.
| Etosha | Kruger | K-W test | Wilcoxon | |||
| Locus | C | APD ± SE | C | APD ± SE | χ 2, p-value | Z, p-value |
| β-Fibr intron | 630 | 61.19±1.41 | 276 | 50.66±2.69 | 18.45, p <0.001 | −4.295, p <0.001 |
| DRA | 2556 | 68.21±0.75 | 465 | 84.37±1.39 | 75.80, p <0.001 | 8.701, p <0.0001 |
| DQA | 528 | 87.25±1.29 | 253 | 87.75±1.85 | 0.28, p = 0.778 | 0.080, p = 0.778 |
| DQAALL | 630 | 86.04±1.15 | 435 | 85.38±1.31 | 1.15, p = 0.284 | −1.072, p = 0.284 |
Average percent difference (APD) and standard error (SE) are reported by population for β-Fibr intron and ELA loci. APD was estimated by pair-wise comparisons of all individuals in a population, with C equal to the number of comparisons made at each locus [72]. Chi-square (χ2) and Z statistics are reported for Kruskal-Wallis (K-W) rank randomization and Wilcoxon tests, respectively. Significant rejection (p<0.05) of the null hypothesis of group mean equality is indicated in boldface. Estimates for the DQA locus are reported both excluding (DQA) and including (DQAALL) individuals with multi-locus genotypes.