Table 6. Top 10 RMSD values for GroES-GroEL with experimental data, after the scoring stage.
Overall RMSD | ||||
GroEL | GroEL | |||
Rank | all | GroES | cis | trans |
1 | 11.1 | 19.7 | 5.7 | 12.7 |
2 | 12.1 | 33.5 | 8.0 | 5.1 |
3 | 10.1 | 25.9 | 6.7 | 7.2 |
4 | 9.8 | 15.1 | 6.9 | 10.5 |
5 | 12.7 | 32.2 | 6.4 | 10.6 |
6 | 13.2 | 23.7 | 7.9 | 14.6 |
7 | 31.9 | 20.5 | 2.9 | 46.2 |
8 | 25.0 | 25.2 | 3.2 | 35.1 |
9 | 31.7 | 21.7 | 6.5 | 45.3 |
10 | 10.6 | 21.4 | 9.5 | 8.3 |
RMSD and ligand RMSD values of the top 10 models for the full GroES-GroEL complex (in Å), compared to the reference structure; models were fitted (energy-minimized) using a 23.5 Å experimental density map that was downsampled to 44.8 Å; then, the models were ranked by gradient matching using the full density map.