Table 5.

Bioconductor’s packages for normalization and differential expression of HTS data.

Name	Site	Description	Authors
easyRNASeq	http://bioconductor.org/packages/2.10/bioc/html/easyRNASeq.html	Count summarization and normalization for RNA-seq data	Delhomme et al. (2012)
DESeq	http://bioconductor.org/packages/2.10/bioc/html/DESeq.html	Differential gene expression analysis based on the negative binomial distribution	Anders and Huber (2010)
edgeR	http://bioconductor.org/packages/2.10/bioc/html/edgeR.html	Empirical analysis of digital gene expression data in R	Robinson et al. (2010)
baySeq	http://www.bioconductor.org/packages/release/bioc/html/baySeq.html	Normalization and differential gene expression by Bayesian methods	Hardcastle and Kelly (2010)