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. 2012 Dec 17;3:287. doi: 10.3389/fgene.2012.00287

Table 8.

miRNA target prediction tools and databases.

Name Site Description Authors
TargetScan http://www.targetscan.org/ miRNA target prediction algorithm Lewis et al. (2003)
DIANA-microT http://diana.cslab.ece.ntua.gr/microT/ miRNA target prediction algorithm Maragkakis et al. (2009)
RNA Hybrid http://bibiserv.techfak.uni-bielefeld.de/rnahybrid/ Tool for finding the minimum free energy hybridization of a long and a short RNA Rehmsmeier et al. (2004)
miRDB http://mirdb.org/miRDB/ Database for miRNA target prediction by MirTarget2 and functional annotation Wang and El Naqa (2008)
microRNA.org http://www.microrna.org/microrna/home.do Database of miRNA target prediction by the miRanda algorithm Betel et al. (2008)
TarBase http://diana.cslab.ece.ntua.gr/tarbase/ Manually curated database of experimentally supported microRNA targets Papadopoulos et al. (2009)
miR2Disease http://www.mir2disease.org/ Manually curated database of miRNA deregulation in various human diseases Jiang et al. (2009)
miRecords http://mirecords.biolead.org/index.php Database of experimentally validated miRNA targets and integration of predicted miRNA targets produced by 11 miRNA target prediction programs Xiao et al. (2009)